Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0419
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26768| Best HMM Match : PCI (HMM E-Value=0.01)                     162   2e-40
SB_57396| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_42927| Best HMM Match : Spore_permease (HMM E-Value=1.1)            28   7.0  

>SB_26768| Best HMM Match : PCI (HMM E-Value=0.01)
          Length = 266

 Score =  162 bits (394), Expect = 2e-40
 Identities = 93/222 (41%), Positives = 137/222 (61%), Gaps = 9/222 (4%)
 Frame = +1

Query: 13  NHPL*QFVLLAKGAKGSACAELIKQVLEAPGVHVFGELLEMPNIKELESGPYATHLKTLN 192
           +H L Q+VLLAK A+G+A   LIKQVLEAP ++VFGEL+EM NI+EL     A   + LN
Sbjct: 10  SHQLEQYVLLAKSARGAALTALIKQVLEAPALYVFGELIEMSNIQELAKTENAPFWQLLN 69

Query: 193 LFAYGTY---KDYIENKSDYLE--LTTVQCKKLQHLTIA--TLATQEKCIPYSVL-LEEL 348
           +FA+GTY   KD +     ++   + T+    L   +I    + T     P  +  L  L
Sbjct: 70  IFAFGTYTDYKDVVALLHIHVRHHVLTLYSWMLWSYSIFLDNMGTLPPLTPVQIKKLRHL 129

Query: 349 DIKNVRDL-EDLIIEAIYADIIHGKLDQECKRVEVDVALGRXARLEDAASIADVLADWCN 525
            I ++    +DLIIEAIYADIIHGKLDQ+ K++EV+ A+GR  + E   +IA++L DWC 
Sbjct: 130 TIVSLASKSKDLIIEAIYADIIHGKLDQKNKQLEVEYAMGRDIKPETVGTIAEILQDWCQ 189

Query: 526 ACEAVLNSVDQHIQRANHQKQXAIRHQQGIEQKILYXKKTLK 651
           +C+++LNS+D+ I RAN  K+     +  +E ++   +K +K
Sbjct: 190 SCDSILNSIDKQIGRANTYKEKKTMQKNTVEAEVENLRKAIK 231


>SB_57396| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 757

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
 Frame = -1

Query: 660 CLSL--QCLFXV*NLLFYTLLMSDSXLFLMISSLY------VLIYRIEYCFTSIAPVGQD 505
           CLSL  QC      ++FY L++ D  +FL++SS +      ++   I +C   + P G D
Sbjct: 683 CLSLMKQCWETYIGIVFYRLVIVD-FVFLLLSSFFGEFIRRIVADNIGWCKMKVGPPGFD 741

Query: 504 IS 499
           IS
Sbjct: 742 IS 743


>SB_42927| Best HMM Match : Spore_permease (HMM E-Value=1.1)
          Length = 670

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 436 KRVEVDVALGRXARLEDAASIADVLADWCNAC 531
           K +   V LG+  +L+D A +AD++AD   +C
Sbjct: 399 KTMLATVGLGKPLKLDDDAVMADIVADSSGSC 430


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,418,254
Number of Sequences: 59808
Number of extensions: 425551
Number of successful extensions: 987
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)