Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0419
(750 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g02090.3 68414.m00133 COP9 signalosome complex subunit 7ii / ... 137 8e-33
At1g02090.2 68414.m00132 COP9 signalosome complex subunit 7ii / ... 137 8e-33
At1g02090.1 68414.m00131 COP9 signalosome complex subunit 7ii / ... 137 8e-33
At3g02200.2 68416.m00199 proteasome family protein contains Pfam... 49 4e-06
At4g19006.1 68417.m02801 26S proteasome regulatory subunit, puta... 46 3e-05
At5g45620.1 68418.m05608 26S proteasome regulatory subunit, puta... 44 1e-04
At3g02200.1 68416.m00198 proteasome family protein contains Pfam... 44 1e-04
At5g15610.2 68418.m01827 proteasome family protein contains Pfam... 40 0.001
At4g11540.1 68417.m01851 DC1 domain-containing protein contains ... 31 0.82
At5g65240.1 68418.m08207 leucine-rich repeat family protein / pr... 29 2.5
At5g27640.1 68418.m03311 eukaryotic translation initiation facto... 28 5.8
At5g25780.1 68418.m03060 eukaryotic translation initiation facto... 28 5.8
>At1g02090.3 68414.m00133 COP9 signalosome complex subunit 7ii / CSN
complex subunit 7ii (CSN7) (COP15) / FUSCA protein
(FUS5) FUSCA5, CSN7, COP15; identical to CSN complex
subunit 7ii [Arabidopsis thaliana] GI:18056671, FUS5
protein of the COP9 complex GI:3288823; identical to
cDNA CSN complex subunit CSN7, alternatively spliced
Length = 237
Score = 137 bits (331), Expect = 8e-33
Identities = 76/208 (36%), Positives = 114/208 (54%), Gaps = 1/208 (0%)
Frame = +1
Query: 28 QFVLLAKGAKGSACAELIKQVLEAPGVHVFGELLEMPNIKELESGPYATHLKTLNLFAYG 207
Q V A K A LI + P + F E+L +PN+ +LE + +L L LFA+G
Sbjct: 13 QLVKRASTCKSEALGPLIIEATSHPSLFAFSEILALPNVAQLEGTTDSVYLDLLRLFAHG 72
Query: 208 TYKDYIENKSDYLELTTVQCKKLQHLTIATLATQEKCIPYSVLLEELDIKNVRDLEDLII 387
T+ DY N + L+ Q KL+ LT+ TLA K +PY L+ ELD+ NVR+LED +I
Sbjct: 73 TWGDYKCNATRLPHLSPDQILKLKQLTVLTLAESNKVLPYDTLMVELDVSNVRELEDFLI 132
Query: 388 -EAIYADIIHGKLDQECKRVEVDVALGRXARLEDAASIADVLADWCNACEAVLNSVDQHI 564
E +YA I+ GKLDQ + EV A GR R ++ L++W N E +L S+ I
Sbjct: 133 NECMYAGIVRGKLDQLKRCFEVPFAAGRDLRPGQLGNMLHTLSNWLNTSENLLISIQDKI 192
Query: 565 QRANHQKQXAIRHQQGIEQKILYXKKTL 648
+ A++ + +H++ E+ + KK+L
Sbjct: 193 KWADNMSEMDKKHRKEAEEGVEEVKKSL 220
>At1g02090.2 68414.m00132 COP9 signalosome complex subunit 7ii / CSN
complex subunit 7ii (CSN7) (COP15) / FUSCA protein
(FUS5) FUSCA5, CSN7, COP15; identical to CSN complex
subunit 7ii [Arabidopsis thaliana] GI:18056671, FUS5
protein of the COP9 complex GI:3288823; identical to
cDNA CSN complex subunit CSN7, alternatively spliced
Length = 225
Score = 137 bits (331), Expect = 8e-33
Identities = 76/208 (36%), Positives = 114/208 (54%), Gaps = 1/208 (0%)
Frame = +1
Query: 28 QFVLLAKGAKGSACAELIKQVLEAPGVHVFGELLEMPNIKELESGPYATHLKTLNLFAYG 207
Q V A K A LI + P + F E+L +PN+ +LE + +L L LFA+G
Sbjct: 13 QLVKRASTCKSEALGPLIIEATSHPSLFAFSEILALPNVAQLEGTTDSVYLDLLRLFAHG 72
Query: 208 TYKDYIENKSDYLELTTVQCKKLQHLTIATLATQEKCIPYSVLLEELDIKNVRDLEDLII 387
T+ DY N + L+ Q KL+ LT+ TLA K +PY L+ ELD+ NVR+LED +I
Sbjct: 73 TWGDYKCNATRLPHLSPDQILKLKQLTVLTLAESNKVLPYDTLMVELDVSNVRELEDFLI 132
Query: 388 -EAIYADIIHGKLDQECKRVEVDVALGRXARLEDAASIADVLADWCNACEAVLNSVDQHI 564
E +YA I+ GKLDQ + EV A GR R ++ L++W N E +L S+ I
Sbjct: 133 NECMYAGIVRGKLDQLKRCFEVPFAAGRDLRPGQLGNMLHTLSNWLNTSENLLISIQDKI 192
Query: 565 QRANHQKQXAIRHQQGIEQKILYXKKTL 648
+ A++ + +H++ E+ + KK+L
Sbjct: 193 KWADNMSEMDKKHRKEAEEGVEEVKKSL 220
>At1g02090.1 68414.m00131 COP9 signalosome complex subunit 7ii / CSN
complex subunit 7ii (CSN7) (COP15) / FUSCA protein
(FUS5) FUSCA5, CSN7, COP15; identical to CSN complex
subunit 7ii [Arabidopsis thaliana] GI:18056671, FUS5
protein of the COP9 complex GI:3288823; identical to
cDNA CSN complex subunit CSN7, alternatively spliced
Length = 260
Score = 137 bits (331), Expect = 8e-33
Identities = 76/208 (36%), Positives = 114/208 (54%), Gaps = 1/208 (0%)
Frame = +1
Query: 28 QFVLLAKGAKGSACAELIKQVLEAPGVHVFGELLEMPNIKELESGPYATHLKTLNLFAYG 207
Q V A K A LI + P + F E+L +PN+ +LE + +L L LFA+G
Sbjct: 13 QLVKRASTCKSEALGPLIIEATSHPSLFAFSEILALPNVAQLEGTTDSVYLDLLRLFAHG 72
Query: 208 TYKDYIENKSDYLELTTVQCKKLQHLTIATLATQEKCIPYSVLLEELDIKNVRDLEDLII 387
T+ DY N + L+ Q KL+ LT+ TLA K +PY L+ ELD+ NVR+LED +I
Sbjct: 73 TWGDYKCNATRLPHLSPDQILKLKQLTVLTLAESNKVLPYDTLMVELDVSNVRELEDFLI 132
Query: 388 -EAIYADIIHGKLDQECKRVEVDVALGRXARLEDAASIADVLADWCNACEAVLNSVDQHI 564
E +YA I+ GKLDQ + EV A GR R ++ L++W N E +L S+ I
Sbjct: 133 NECMYAGIVRGKLDQLKRCFEVPFAAGRDLRPGQLGNMLHTLSNWLNTSENLLISIQDKI 192
Query: 565 QRANHQKQXAIRHQQGIEQKILYXKKTL 648
+ A++ + +H++ E+ + KK+L
Sbjct: 193 KWADNMSEMDKKHRKEAEEGVEEVKKSL 220
>At3g02200.2 68416.m00199 proteasome family protein contains Pfam
domain, PF01399: PCI domain
Length = 417
Score = 48.8 bits (111), Expect = 4e-06
Identities = 40/156 (25%), Positives = 80/156 (51%), Gaps = 9/156 (5%)
Frame = +1
Query: 121 ELLEMPNIKELES-GPYATHLKTLNLFA---YGTYKDYIENKSDYLE---LTTVQC-KKL 276
+LL++P + +LE YA + L +F Y ++ S +L+ L+ C K+
Sbjct: 240 DLLDLPAVAQLEKDAKYAPVYQLLKIFLTQRLNAYTEFQNANSGFLQSYGLSNEDCVTKM 299
Query: 277 QHLTIATLATQEKC-IPYSVLLEELDIKNVRDLEDLIIEAIYADIIHGKLDQECKRVEVD 453
+ L++ LA+ E IPY+ + + L + N +D+E I++AI A +I K+DQ + + V
Sbjct: 300 RLLSLVDLASDESGKIPYTSIKDTLQV-NEQDVELWIVKAITAKLIECKMDQMNQVLIVS 358
Query: 454 VALGRXARLEDAASIADVLADWCNACEAVLNSVDQH 561
+ R + S+ LA W + +++ +++ +
Sbjct: 359 RSSEREFGTKQWQSLRTKLATWKDNISSIITTIESN 394
>At4g19006.1 68417.m02801 26S proteasome regulatory subunit,
putative (RPN9) similar to 26S proteasome subunit p40.5
[Homo sapiens] gi|3618343|dbj|BAA33214
Length = 386
Score = 46.0 bits (104), Expect = 3e-05
Identities = 47/186 (25%), Positives = 78/186 (41%), Gaps = 14/186 (7%)
Frame = +1
Query: 40 LAKGAKGSACAELIKQVLEAPGVHVFGELLEMPNIKELESGPYATHLKTLNLFAYGTYKD 219
L++ K +L L ++ FGELL P +K L L F +G
Sbjct: 193 LSESFKLDLAFDLSLSALLGENIYNFGELLAHPILKSLLGTNVEWLYHILQAFNHGDLVQ 252
Query: 220 Y-----IENKSDYLELTTVQCKK--LQHLTIATLA-------TQEKCIPYSVLLEELDIK 357
Y + N S + V+ +K L+ + I L +++ IP SV+ E +
Sbjct: 253 YQELCRVHNASLSAQPALVENEKKLLEKINILCLIEIIFSRPAEDRTIPLSVIAERTKL- 311
Query: 358 NVRDLEDLIIEAIYADIIHGKLDQECKRVEVDVALGRXARLEDAASIADVLADWCNACEA 537
++ D+E L+++++ +I G LDQ V V A R + S+ D L W +
Sbjct: 312 SIEDVEHLLMKSLSVHLIEGILDQVNGTVYVSWAQPRVLGIPQIKSLRDQLDSWVDKVHT 371
Query: 538 VLNSVD 555
L SV+
Sbjct: 372 TLLSVE 377
>At5g45620.1 68418.m05608 26S proteasome regulatory subunit,
putative (RPN9) contains similarity to 26S proteasome
subunit p40.5 GI:3618343 from [Homo sapiens]
Length = 386
Score = 43.6 bits (98), Expect = 1e-04
Identities = 43/186 (23%), Positives = 78/186 (41%), Gaps = 14/186 (7%)
Frame = +1
Query: 40 LAKGAKGSACAELIKQVLEAPGVHVFGELLEMPNIKELESGPYATHLKTLNLFAYGTYKD 219
L++ K +L L ++ FGELL P +K L L F +G
Sbjct: 193 LSESFKLDLAFDLSLSALLGENIYNFGELLAHPILKSLLGTNVEWLYHILQAFNHGDLVQ 252
Query: 220 Y-----IENKSDYLELTTVQCKK--LQHLTIATLA-------TQEKCIPYSVLLEELDIK 357
Y + N S + V+ +K L+ + I L +++ IP S++ E +
Sbjct: 253 YQELCRVHNASLIAQPALVENEKKLLEKINILCLIEIIFSRPAEDRTIPLSIIAERTKL- 311
Query: 358 NVRDLEDLIIEAIYADIIHGKLDQECKRVEVDVALGRXARLEDAASIADVLADWCNACEA 537
++ D+E L+++++ +I G +DQ + V A R + ++ D L W +
Sbjct: 312 SIEDVEHLLMKSLSVHLIEGIIDQVNGTIYVSWAQPRVLGIPQIKALRDQLDSWVDKVHT 371
Query: 538 VLNSVD 555
L SV+
Sbjct: 372 TLLSVE 377
>At3g02200.1 68416.m00198 proteasome family protein contains Pfam
domain, PF01399: PCI domain
Length = 364
Score = 43.6 bits (98), Expect = 1e-04
Identities = 34/112 (30%), Positives = 61/112 (54%), Gaps = 9/112 (8%)
Frame = +1
Query: 121 ELLEMPNIKELES-GPYATHLKTLNLFA---YGTYKDYIENKSDYLE---LTTVQC-KKL 276
+LL++P + +LE YA + L +F Y ++ S +L+ L+ C K+
Sbjct: 240 DLLDLPAVAQLEKDAKYAPVYQLLKIFLTQRLNAYTEFQNANSGFLQSYGLSNEDCVTKM 299
Query: 277 QHLTIATLATQEKC-IPYSVLLEELDIKNVRDLEDLIIEAIYADIIHGKLDQ 429
+ L++ LA+ E IPY+ + + L + N +D+E I++AI A +I K+DQ
Sbjct: 300 RLLSLVDLASDESGKIPYTSIKDTLQV-NEQDVELWIVKAITAKLIECKMDQ 350
>At5g15610.2 68418.m01827 proteasome family protein contains Pfam
domain, PF01399: PCI domain
Length = 413
Score = 40.3 bits (90), Expect = 0.001
Identities = 45/179 (25%), Positives = 86/179 (48%), Gaps = 9/179 (5%)
Frame = +1
Query: 52 AKGSACAELIKQVLEAPGVHVFGELLEMPNIKELESGPY-ATHLKTLNLFA---YGTYKD 219
AK A +I+ V +AP + +LL+ P + +LE P A + L +F Y +
Sbjct: 219 AKEEAVRAVIEFV-KAPSIFQC-DLLDHPAVAQLEKDPNNAPVYQLLKIFLTQRLDAYME 276
Query: 220 YIENKSDYLE---LTTVQC-KKLQHLTIATLATQEKC-IPYSVLLEELDIKNVRDLEDLI 384
+ S +L+ L C K++ L++ LA+ + IPY+ + L + N ++E +
Sbjct: 277 FQNANSGFLQTYGLVEEDCVAKMRLLSLVDLASDDSGKIPYASIKNTLQV-NDEEVELWV 335
Query: 385 IEAIYADIIHGKLDQECKRVEVDVALGRXARLEDAASIADVLADWCNACEAVLNSVDQH 561
++AI A ++ K+DQ + V V R + S+ LA W + V+++++ +
Sbjct: 336 VKAITAKLVACKMDQMNQVVIVSRCAEREFGQKQWQSLRTKLAAWRDNVRNVISTIESN 394
>At4g11540.1 68417.m01851 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 525
Score = 31.1 bits (67), Expect = 0.82
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +3
Query: 255 HSPVQEITASDH--CNTCNTREMYPLQCVT*GIGY*KC 362
H P+ I + CN CN RE+ L C+ G GY C
Sbjct: 401 HHPLYYIPQVEEKQCNGCNNREVRVLTCIESGCGYVLC 438
>At5g65240.1 68418.m08207 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 617
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/60 (28%), Positives = 33/60 (55%)
Frame = +1
Query: 283 LTIATLATQEKCIPYSVLLEELDIKNVRDLEDLIIEAIYADIIHGKLDQECKRVEVDVAL 462
+ + L T ++ I +S L EE D+ + ++ L E DI+ KLD++ + EV++ +
Sbjct: 485 IMLLELVTGQRAIDFSRLEEEDDVLLLDHVKKLEREKRLEDIVDKKLDEDYIKEEVEMMI 544
>At5g27640.1 68418.m03311 eukaryotic translation initiation factor 3
subunit 9 / eIF-3 eta / eIF3b (TIF3B1) nearly identical
to SP|Q9C5Z1 Eukaryotic translation initiation factor 3
subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b) {Arabidopsis
thaliana}
Length = 712
Score = 28.3 bits (60), Expect = 5.8
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Frame = +1
Query: 163 PYATHLKTLNLFAYGTYKDYIENKSDYLELTT---VQCKKLQHLTIATLATQEKCIPYSV 333
P L+ NLF+ K Y ++ +YL + + KK + +E+ IP V
Sbjct: 394 PSKVELRQKNLFSVSDCKMYWQSSGEYLAVKVDRYTKTKKSTYSGFELFRIKERDIPIEV 453
Query: 334 LLEELDIKN 360
L ELD KN
Sbjct: 454 L--ELDNKN 460
>At5g25780.1 68418.m03060 eukaryotic translation initiation factor 3
subunit 9, putative / eIF-3 eta, putative / eIF3b,
putative nearly identical to SP|Q9C5Z1 Eukaryotic
translation initiation factor 3 subunit 9 (eIF-3 eta)
(eIF3 p110) (eIF3b) {Arabidopsis thaliana}
Length = 714
Score = 28.3 bits (60), Expect = 5.8
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Frame = +1
Query: 163 PYATHLKTLNLFAYGTYKDYIENKSDYLELTT---VQCKKLQHLTIATLATQEKCIPYSV 333
P L+ NLF+ K Y ++ +YL + + KK + +E+ IP V
Sbjct: 395 PSKVELRQKNLFSVSDCKMYWQSSGEYLAVKVDRYTKTKKSTYSGFELFRIKERDIPIEV 454
Query: 334 LLEELDIKN 360
L ELD KN
Sbjct: 455 L--ELDNKN 461
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,795,228
Number of Sequences: 28952
Number of extensions: 284014
Number of successful extensions: 755
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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