Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0416
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    32   0.083
SPCC1442.09 |trp3||anthranilate synthase component I|Schizosacch...    27   4.1  
SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||...    27   4.1  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    26   5.4  

>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 32.3 bits (70), Expect = 0.083
 Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = +3

Query: 495  QLAGGYYFSSFDMAAGFH-SEFPIS*RVLLKRLPFRNTRDGMYGVLGPCHFRSSVXGMVS 671
            QL    + S F   AGFH +   I   + L  L   N    MY V+  C +R       S
Sbjct: 1159 QLPFDRFLSFFYAHAGFHVNNMVIMFSLQLLMLVIINL-GAMYTVVPVCRYRQFDSLTAS 1217

Query: 672  VYPEGCMEL 698
            +YPEGC +L
Sbjct: 1218 LYPEGCYQL 1226


>SPCC1442.09 |trp3||anthranilate synthase component
           I|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 489

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 15/27 (55%), Positives = 15/27 (55%)
 Frame = -3

Query: 600 YERAVFSIXPFKKWGILNESPLPYQKK 520
           YE AVF I   KK     E PLP QKK
Sbjct: 173 YEAAVFKINMLKKKLESPEIPLPEQKK 199


>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 426

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 163 TRVTLHTRVNTGVTPKYVLQSTPTSCVERRPIIALSPXRTT 285
           TR T+  RV T +         P SC++  P ++L   +TT
Sbjct: 231 TRCTIPKRVITSMHNNIAELYNPISCIKSLPYLSLEEAKTT 271


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +1

Query: 163 TRVTLHTRVNTGVTP--KYVLQSTPTSCVERRPIIALSPXRTTKSS 294
           T   +  R N GVT     + QS+P   V+  P+    P  TTKSS
Sbjct: 650 TNTGVQQRGNVGVTTTGSILTQSSPALPVQPVPLAYSKPAPTTKSS 695


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,831,878
Number of Sequences: 5004
Number of extensions: 52659
Number of successful extensions: 112
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)