Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0416
         (800 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0062 + 17755460-17755522,17756878-17756953,17757074-177571...    28   9.9  

>01_05_0062 +
           17755460-17755522,17756878-17756953,17757074-17757145,
           17757274-17757361,17757793-17758033,17759461-17759576,
           17759804-17760021,17760210-17760241,17760338-17760440,
           17760531-17760805
          Length = 427

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +3

Query: 612 GMYGVLGPCHFRSSVXGMVSVYPEGCMELGAFSWTFL-NFTWTXVWSRWYGRTXV 773
           G++      ++RS +  +     +G   +G F+W+ L NF W   ++  +G   V
Sbjct: 349 GVHDTTRVAYYRSYITKLKEAIDDGANCIGYFAWSLLDNFEWKLGYTSRFGLVYV 403


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,841,528
Number of Sequences: 37544
Number of extensions: 327854
Number of successful extensions: 519
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)