Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0416
         (800 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1853| Best HMM Match : RVT_1 (HMM E-Value=5.99994e-41)              30   1.9  
SB_20138| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.5  
SB_28811| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_1853| Best HMM Match : RVT_1 (HMM E-Value=5.99994e-41)
          Length = 1069

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = +3

Query: 423 RELNRNTLRGXTIPLPIICRFK*NQLAGGYYFSSFDMAAGFH 548
           R+LN  T R  + PLP I     ++LA   YF++ DM +G+H
Sbjct: 595 RKLNEGT-RVTSYPLPNITESL-DRLADASYFTTIDMGSGYH 634


>SB_20138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 860

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = +3

Query: 423 RELNRNTLRGXTIPLPIICRFK*NQLAGGYYFSSFDMAAGFH 548
           R+LN  T R  + PLP I     + LA   YF++ DM +G+H
Sbjct: 183 RKLNEGT-RVTSYPLPNITESL-DSLADASYFTTIDMVSGYH 222


>SB_28811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 982

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/42 (33%), Positives = 26/42 (61%)
 Frame = +2

Query: 284 QKVRDIVSELLSNTILFREXKXTFTSSPIILVKKKNGXSIAC 409
           ++VR  + +LL +  + RE    + +SP++LV+KK+G    C
Sbjct: 320 EEVRSAIEDLLESGTI-RESNSPY-ASPVVLVRKKDGALRVC 359


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,205,165
Number of Sequences: 59808
Number of extensions: 394159
Number of successful extensions: 828
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)