Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0416
         (800 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X14037-1|CAA32198.1| 1053|Drosophila melanogaster polyprotein pr...    37   0.028
AY928610-2|AAX28844.1| 1088|Drosophila melanogaster reverse tran...    30   4.2  

>X14037-1|CAA32198.1| 1053|Drosophila melanogaster polyprotein
           protein.
          Length = 1053

 Score = 37.1 bits (82), Expect = 0.028
 Identities = 22/47 (46%), Positives = 29/47 (61%)
 Frame = +3

Query: 423 RELNRNTLRGXTIPLPIICRFK*NQLAGGYYFSSFDMAAGFHSEFPI 563
           RELN NT+     PLP+I   +  +L G  YF+  DMA+GFH + PI
Sbjct: 514 RELNSNTI-SDKYPLPLISD-QIARLRGANYFTCLDMASGFH-QIPI 557



 Score = 31.9 bits (69), Expect = 1.0
 Identities = 21/44 (47%), Positives = 27/44 (61%)
 Frame = +2

Query: 278 ERQKVRDIVSELLSNTILFREXKXTFTSSPIILVKKKNGXSIAC 409
           ER+ VR  VSEL+   I+ R     F +SP++LVKKKNG    C
Sbjct: 469 EREVVRMQVSELIRCNIV-RPSCSPF-ASPMLLVKKKNGTDRLC 510


>AY928610-2|AAX28844.1| 1088|Drosophila melanogaster reverse
           transcriptase protein.
          Length = 1088

 Score = 29.9 bits (64), Expect = 4.2
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +3

Query: 423 RELNRNTLRGXTIPLPIICRFK*NQLAGGYYFSSFDMAAGFH 548
           R+LN  T+     P+P I     ++L    YFS+ D+A+GFH
Sbjct: 264 RKLNEKTI-SDRYPIPNIADIL-DRLGKAKYFSTLDLASGFH 303


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,927,649
Number of Sequences: 53049
Number of extensions: 558744
Number of successful extensions: 801
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3736869864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)