Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0416
         (800 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en...    32   0.55 
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET...    32   0.55 
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET...    32   0.55 
Z69384-12|CAM33510.1|  319|Caenorhabditis elegans Hypothetical p...    29   2.9  
Z69384-11|CAC42340.2|  384|Caenorhabditis elegans Hypothetical p...    29   2.9  
Z69383-16|CAM33511.1|  319|Caenorhabditis elegans Hypothetical p...    29   2.9  
Z69383-15|CAC42286.2|  384|Caenorhabditis elegans Hypothetical p...    29   2.9  
AF016432-5|AAB65378.1|  347|Caenorhabditis elegans Seven tm rece...    29   2.9  

>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
            protein precursor protein.
          Length = 2272

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 15/43 (34%), Positives = 29/43 (67%)
 Frame = +2

Query: 281  RQKVRDIVSELLSNTILFREXKXTFTSSPIILVKKKNGXSIAC 409
            + ++R ++ ++L+  ++ RE K  + SSP++LVKKK+G    C
Sbjct: 1041 KPEIRKMIQKMLNQKVI-RESKSPW-SSPVVLVKKKDGSIRMC 1081


>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
            protein, isoforma protein.
          Length = 2175

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 15/43 (34%), Positives = 29/43 (67%)
 Frame = +2

Query: 281  RQKVRDIVSELLSNTILFREXKXTFTSSPIILVKKKNGXSIAC 409
            + ++R ++ ++L+  ++ RE K  + SSP++LVKKK+G    C
Sbjct: 944  KPEIRKMIQKMLNQKVI-RESKSPW-SSPVVLVKKKDGSIRMC 984


>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
            protein, isoformb protein.
          Length = 2186

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 15/43 (34%), Positives = 29/43 (67%)
 Frame = +2

Query: 281  RQKVRDIVSELLSNTILFREXKXTFTSSPIILVKKKNGXSIAC 409
            + ++R ++ ++L+  ++ RE K  + SSP++LVKKK+G    C
Sbjct: 955  KPEIRKMIQKMLNQKVI-RESKSPW-SSPVVLVKKKDGSIRMC 995


>Z69384-12|CAM33510.1|  319|Caenorhabditis elegans Hypothetical
           protein F13E9.11b protein.
          Length = 319

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 690 MELGAFSWTFLNFTWTXVWSRWYGRTXVL 776
           ++ G   W +LN T   VW+ W G   V+
Sbjct: 27  LQFGLIDWYYLNVTGENVWAAWIGPDFVV 55


>Z69384-11|CAC42340.2|  384|Caenorhabditis elegans Hypothetical
           protein F13E9.11a protein.
          Length = 384

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 690 MELGAFSWTFLNFTWTXVWSRWYGRTXVL 776
           ++ G   W +LN T   VW+ W G   V+
Sbjct: 92  LQFGLIDWYYLNVTGENVWAAWIGPDFVV 120


>Z69383-16|CAM33511.1|  319|Caenorhabditis elegans Hypothetical
           protein F13E9.11b protein.
          Length = 319

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 690 MELGAFSWTFLNFTWTXVWSRWYGRTXVL 776
           ++ G   W +LN T   VW+ W G   V+
Sbjct: 27  LQFGLIDWYYLNVTGENVWAAWIGPDFVV 55


>Z69383-15|CAC42286.2|  384|Caenorhabditis elegans Hypothetical
           protein F13E9.11a protein.
          Length = 384

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 690 MELGAFSWTFLNFTWTXVWSRWYGRTXVL 776
           ++ G   W +LN T   VW+ W G   V+
Sbjct: 92  LQFGLIDWYYLNVTGENVWAAWIGPDFVV 120


>AF016432-5|AAB65378.1|  347|Caenorhabditis elegans Seven tm
           receptor protein 225 protein.
          Length = 347

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -3

Query: 639 GMVQVLRTCRPGCY--ERAVFSIXPFKKWGILNESPL 535
           G + +L  C  GCY    AVFS+    +W ++ E+PL
Sbjct: 89  GGLLILNACYWGCYGASMAVFSLHFIYRWLVVTENPL 125


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,501,139
Number of Sequences: 27780
Number of extensions: 291927
Number of successful extensions: 487
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)