Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0416
         (800 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   3.3  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   7.6  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   7.6  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = -2

Query: 505 PANWFYLNRQIIGRGIVXP 449
           P N++Y+   + G G++ P
Sbjct: 410 PQNFYYIEEYLPGNGVIIP 428


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 175 LHTRVNTGVTPKYVLQS 225
           LHTR++T +   YV+ S
Sbjct: 329 LHTRISTAIDLGYVVDS 345


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 175 LHTRVNTGVTPKYVLQS 225
           LHTR++T +   YV+ S
Sbjct: 329 LHTRISTAIDLGYVVDS 345


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,154
Number of Sequences: 438
Number of extensions: 3531
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)