Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0415
(800 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1811 - 40055106-40055174,40055291-40055440,40056696-40056782 94 1e-19
01_06_1812 - 40057904-40057972,40058071-40058220,40059449-40059532 93 2e-19
07_03_0989 + 23161020-23161412 52 5e-07
07_03_0990 + 23173868-23174200 51 1e-06
01_06_1364 + 36684937-36685281 50 3e-06
01_05_0651 + 23930455-23930457,23930543-23930636,23930764-239308... 49 4e-06
07_03_0988 + 23160028-23160360 44 2e-04
01_04_0034 + 15318509-15319567 33 0.20
>01_06_1811 - 40055106-40055174,40055291-40055440,40056696-40056782
Length = 101
Score = 94.3 bits (224), Expect = 1e-19
Identities = 47/90 (52%), Positives = 58/90 (64%), Gaps = 5/90 (5%)
Frame = +1
Query: 100 DEKK-----GENEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFD 264
DEKK G HINLKV GQD V F+IK+ T L+KLMNAYCDR + ++ + F FD
Sbjct: 8 DEKKPAGGEGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDIKSIAFLFD 67
Query: 265 GQPINENDTPTSLEMEEGDTIEVYQQQTGG 354
G+ +N TP LEME+GD I+ QTGG
Sbjct: 68 GRRLNAEQTPDQLEMEDGDEIDAMLHQTGG 97
>01_06_1812 - 40057904-40057972,40058071-40058220,40059449-40059532
Length = 100
Score = 93.1 bits (221), Expect = 2e-19
Identities = 43/82 (52%), Positives = 53/82 (64%)
Frame = +1
Query: 109 KGENEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFDGQPINEND 288
+G HINLKV GQD V F+IK+ T L+KLMNAYCDR + M + F FDG+ +
Sbjct: 15 EGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNAIAFLFDGRRLRGEQ 74
Query: 289 TPTSLEMEEGDTIEVYQQQTGG 354
TP LEME+GD I+ QTGG
Sbjct: 75 TPDELEMEDGDEIDAMLHQTGG 96
>07_03_0989 + 23161020-23161412
Length = 130
Score = 52.0 bits (119), Expect = 5e-07
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Frame = +1
Query: 121 EHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQ--VVRFRFDGQPINENDTP 294
E++ LKV G D V + + L+ LM+ Y DR+ +Q RF FDG+ + TP
Sbjct: 37 EYVTLKVQGTDGRAVYRTMLRTEELQGLMDFYYDRSHGRVQRGTGRFLFDGRRLRGWQTP 96
Query: 295 TSLEMEEGDTIEVYQQQTGGVS 360
L+ME+GD + +++ GG +
Sbjct: 97 AELQMEDGDEVNFFEELIGGAA 118
>07_03_0990 + 23173868-23174200
Length = 110
Score = 50.8 bits (116), Expect = 1e-06
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Frame = +1
Query: 109 KGENEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQ--VVRFRFDGQPINE 282
K E++ LKV D V ++ L+ LM+ Y DRA +Q RF +DG+ ++
Sbjct: 25 KRAGEYVTLKVQDTDGRAVYRTMRWTEQLQGLMDFYYDRAHGRVQRGTGRFLYDGRRLSG 84
Query: 283 NDTPTSLEMEEGDTIEVYQQQTGGVS 360
TP L+ME+GD ++ +++ GG +
Sbjct: 85 WQTPAELDMEDGDEVDFFEELIGGAA 110
>01_06_1364 + 36684937-36685281
Length = 114
Score = 49.6 bits (113), Expect = 3e-06
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Frame = +1
Query: 85 NLKMADEKKGENEH-INLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRF-R 258
+LK+ + G I + V Q A V F IK LR++M+ YC + L + V+F
Sbjct: 17 DLKLVKAEPGTGPGLITITVTSQTFADVYFAIKPRVKLRRVMDLYCGKHSLDPKTVKFID 76
Query: 259 FDGQPINENDTPTSLEMEEGDTIEVYQQQTGGVSL 363
DG+ + TP + +++G TI + Q GG +
Sbjct: 77 DDGRFVRSEQTPEEVGLQDGSTISLAIDQQGGACI 111
>01_05_0651 +
23930455-23930457,23930543-23930636,23930764-23930849,
23930930-23931108,23932275-23932482,23932808-23932975
Length = 245
Score = 49.2 bits (112), Expect = 4e-06
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Frame = +1
Query: 79 HINLKMADEKKGENEHINLKVLGQDNA-IVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRF 255
HI+L + E+ E + + V QD A QF++ K KL AY + LS+ + F
Sbjct: 157 HIDLDKSPERHEAREKVVVTV--QDKAGHHQFRLYKDEKFGKLFRAYAKKVNLSVADLTF 214
Query: 256 RFDGQPINENDTPTSLEMEEGDTIEV 333
FDG ++ TP L +E+ D +EV
Sbjct: 215 AFDGDKVDAESTPEDLGLEDEDMVEV 240
>07_03_0988 + 23160028-23160360
Length = 110
Score = 43.6 bits (98), Expect = 2e-04
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Frame = +1
Query: 127 INLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRA-GLSMQVVRFRFDGQPINENDTPTSL 303
I LKV+ Q++ ++ I+ L+ +M+ Y +A ++ F FDG + + TP L
Sbjct: 21 ITLKVMDQEDRRIRHTIRMADKLQVVMDMYYAKAPDVTYGTGTFLFDGIRLKGDMTPMGL 80
Query: 304 EMEEGDTIEVYQQQTGG 354
EM +GDT++ + GG
Sbjct: 81 EMVDGDTVDFFPVMIGG 97
>01_04_0034 + 15318509-15319567
Length = 352
Score = 33.5 bits (73), Expect = 0.20
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Frame = +1
Query: 127 INLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSM--QVVRFRFDGQPINENDTPTS 300
+ + +L A + +++ L+ LM+ R SM ++G+ + ++ TP
Sbjct: 276 VTIDLLTMVKAKRTYTLRRTDKLQGLMDLCLSREPASMYRHGCVLIYEGRRVQDSQTPDD 335
Query: 301 LEMEEGDTIEVYQQQTG 351
L++E+GDTI +Q G
Sbjct: 336 LKLEDGDTIHAIARQVG 352
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,666,798
Number of Sequences: 37544
Number of extensions: 316648
Number of successful extensions: 545
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -