Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0415
         (800 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41074| Best HMM Match : ubiquitin (HMM E-Value=2.3e-10)             34   0.15 
SB_17147| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_41074| Best HMM Match : ubiquitin (HMM E-Value=2.3e-10)
          Length = 333

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
 Frame = +1

Query: 100 DEKKGENEHINLKVLGQDNAIVQFKIKKHT--PLRKLMNAYCDRAGLSMQVVRFRFDGQP 273
           D++   N HI +  L  +  ++ FK  KHT   ++ L+ A   + G      R  F+GQ 
Sbjct: 64  DDQIVSNPHIAVLTLTGERILIPFKSPKHTIIEVKYLIEA---KGGYPKDQQRLVFNGQV 120

Query: 274 INENDTPTSLEMEEGDTIEVYQQQTGG 354
           +++ DT   + +  G T+ +  +  GG
Sbjct: 121 LSDEDTFEKVGIFAGATLHLIVRLLGG 147


>SB_17147| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 487

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +1

Query: 85  NLKMADEKKGENEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDR 225
           ++K +DE+ GE E +  K  G+D A     +K+  P + L +   DR
Sbjct: 33  DVKASDEEAGEEEDVEAKDNGEDGASDTI-VKEKKPCKSLSDLQDDR 78


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,594,262
Number of Sequences: 59808
Number of extensions: 403265
Number of successful extensions: 747
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)