Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0414
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   253   2e-69
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   253   2e-69
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.8  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  253 bits (619), Expect = 2e-69
 Identities = 119/148 (80%), Positives = 128/148 (86%)
 Frame = +1

Query: 175 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 354
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 355 VRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFXXXXX 534
           VRIPKEQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQF RYF     
Sbjct: 61  VRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLA 120

Query: 535 XXXXXXXTSLCFVYPLDFARTRLAADVG 618
                  TSLCFVYPLDFARTRLAADVG
Sbjct: 121 SGGAAGATSLCFVYPLDFARTRLAADVG 148



 Score = 75.4 bits (177), Expect = 5e-16
 Identities = 32/40 (80%), Positives = 38/40 (95%)
 Frame = +2

Query: 629 GQREFSGLGNCISKIFKSDGLIGLYRGFGVSGQGIIIYRA 748
           G+REF+GLGNC++KIFK+DG+ GLYRGFGVS QGIIIYRA
Sbjct: 152 GEREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRA 191



 Score = 29.5 bits (63), Expect = 0.035
 Identities = 37/154 (24%), Positives = 59/154 (38%)
 Frame = +1

Query: 202 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 381
           F  +  +GG + A S   V P++  +  L    V K    ++ + G+ +   +I K  G+
Sbjct: 115 FVGNLASGGAAGATSLCFVYPLDFARTRLAAD-VGKA-GGEREFTGLGNCLTKIFKADGI 172

Query: 382 LSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFXXXXXXXXXXXXTS 561
              +RG   +V      +A  F F D  + +      KKT F   +             S
Sbjct: 173 TGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPD--PKKTPFLISWGIAQVVTTVAGIVS 230

Query: 562 LCFVYPLDFARTRLAADVGXGRWPA*ILRSRKLH 663
               YP D  R R+   +  GR  + IL    LH
Sbjct: 231 ----YPFDTVRRRMM--MQSGRAKSEILYKSTLH 258



 Score = 27.5 bits (58), Expect = 0.14
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +1

Query: 262 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 420
           P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  253 bits (619), Expect = 2e-69
 Identities = 119/148 (80%), Positives = 128/148 (86%)
 Frame = +1

Query: 175 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 354
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 355 VRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFXXXXX 534
           VRIPKEQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQF RYF     
Sbjct: 61  VRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLA 120

Query: 535 XXXXXXXTSLCFVYPLDFARTRLAADVG 618
                  TSLCFVYPLDFARTRLAADVG
Sbjct: 121 SGGAAGATSLCFVYPLDFARTRLAADVG 148



 Score = 75.4 bits (177), Expect = 5e-16
 Identities = 32/40 (80%), Positives = 38/40 (95%)
 Frame = +2

Query: 629 GQREFSGLGNCISKIFKSDGLIGLYRGFGVSGQGIIIYRA 748
           G+REF+GLGNC++KIFK+DG+ GLYRGFGVS QGIIIYRA
Sbjct: 152 GEREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRA 191



 Score = 29.5 bits (63), Expect = 0.035
 Identities = 37/154 (24%), Positives = 59/154 (38%)
 Frame = +1

Query: 202 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 381
           F  +  +GG + A S   V P++  +  L    V K    ++ + G+ +   +I K  G+
Sbjct: 115 FVGNLASGGAAGATSLCFVYPLDFARTRLAAD-VGKA-GGEREFTGLGNCLTKIFKADGI 172

Query: 382 LSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFXXXXXXXXXXXXTS 561
              +RG   +V      +A  F F D  + +      KKT F   +             S
Sbjct: 173 TGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPD--PKKTPFLISWGIAQVVTTVAGIVS 230

Query: 562 LCFVYPLDFARTRLAADVGXGRWPA*ILRSRKLH 663
               YP D  R R+   +  GR  + IL    LH
Sbjct: 231 ----YPFDTVRRRMM--MQSGRAKSEILYKSTLH 258



 Score = 27.5 bits (58), Expect = 0.14
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +1

Query: 262 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 420
           P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 648 PENSRWPSPXTDIGGKTGTCEVK 580
           P N RW  P  ++GG +G    K
Sbjct: 613 PLNIRWSYPGEEMGGSSGVLAKK 635


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,507
Number of Sequences: 438
Number of extensions: 4199
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)