Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0413
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    26   3.7  
SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces ...    25   6.4  
SPAC222.03c |tim10||Tim9-Tim10 complex subunit Tim10|Schizosacch...    25   8.5  
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   8.5  
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    25   8.5  

>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +1

Query: 109 NFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLESDVVKVKNVHIIDGVKKY 267
           N N    +GI  E+SK+ +   KN + SS + K     V+ +    I+G+K +
Sbjct: 376 NINEINEEGIMTEVSKYASLVNKNYEISSGKLKERQVAVRAR----IEGIKAH 424


>SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 20/78 (25%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
 Frame = +1

Query: 64  EVIHEXTCPELKPVN-NFNLTAY-QGIWYEISKFPNESE--KNGKCSSAEYKLESDVVKV 231
           EV+H+  C +++  + +F + A+   ++Y+ ++F   S    +  CS+ +Y     + K 
Sbjct: 276 EVLHDTRCVKIQEDSESFWIMAHCLKMFYDETEFLPLSGLLPDMNCSTQQYVKLQVIYKE 335

Query: 232 KNVHIIDGVKKYIERTAK 285
           K+ + I   KKY+++T K
Sbjct: 336 KSENDILKFKKYVQQTLK 353


>SPAC222.03c |tim10||Tim9-Tim10 complex subunit
           Tim10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 184 KCSSAEYKLESDVVKVKNVHIIDGVKKYIERTAKLTDDANK 306
           KC S +Y  E+D+ K ++V I   V KY E    L+    K
Sbjct: 42  KCISPKY-YEADLTKGESVCIDRCVSKYFEANQSLSQHMQK 81


>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/50 (24%), Positives = 29/50 (58%)
 Frame = +1

Query: 346 SRDGSVQILATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLESDAKT 495
           S + +++ ++ D NN A  +N +YD+   ++  F  ++ R K +E + ++
Sbjct: 161 SLEANLKAISKDSNNKA--HNNRYDESSLTNPEFSILVERLKSIEENLQS 208


>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/40 (25%), Positives = 22/40 (55%)
 Frame = +1

Query: 214 SDVVKVKNVHIIDGVKKYIERTAKLTDDANKAAKLTVTFK 333
           S + +V NV +ID +K ++ER     +  ++  + +  F+
Sbjct: 746 SSIWEVANVSVIDSLKNHLERATAYAEKRSEDERWSSIFQ 785


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.131    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,949,139
Number of Sequences: 5004
Number of extensions: 34585
Number of successful extensions: 101
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)