Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0413
         (600 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0805 + 21400345-21400701,21400797-21400975,21401223-214012...    54   7e-08
02_04_0592 - 24171698-24172285                                         46   3e-05
07_01_1023 + 8840754-8842988,8843189-8843362                           30   1.6  
04_03_0673 - 18562497-18563010,18563080-18563471,18563553-185636...    29   2.8  
06_01_0084 + 675185-677389                                             29   3.8  

>08_02_0805 +
           21400345-21400701,21400797-21400975,21401223-21401271,
           21401310-21401390,21401988-21402605
          Length = 427

 Score = 54.4 bits (125), Expect = 7e-08
 Identities = 33/81 (40%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
 Frame = +1

Query: 94  LKPVNNFNLTAYQGIWYEISKFPNESE-KNGKCSSAEYKLESD-VVKVKNVHIIDGVKKY 267
           +K V N +L  Y G WYEI+ FP+  + ++G  + A Y L  D  VKV N    DG + +
Sbjct: 1   MKVVRNLDLERYMGRWYEIACFPSRFQPRDGTNTRATYTLAGDGAVKVLNETWTDGRRGH 60

Query: 268 IERTAKLTDDANKAAKLTVTF 330
           IE TA   D  +  AKL V F
Sbjct: 61  IEGTAYRADPVSDEAKLKVKF 81


>02_04_0592 - 24171698-24172285
          Length = 195

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
 Frame = +1

Query: 91  ELKPVNNFNLTAYQGIWYEISKFPNESE-KNGKCSSAEYKLESD--VVKVKN-VHIIDGV 258
           E+  V   ++  Y G WYEI+  PN  + ++G+ + A Y L  D   V V N      G 
Sbjct: 13  EMTVVRGLDVARYMGRWYEIASLPNFFQPRDGRDTRATYALRPDGATVDVLNETWTSSGK 72

Query: 259 KKYIERTAKLTDDANKAAKLTVTF 330
           + YI+ TA   D A+  AKL V F
Sbjct: 73  RDYIKGTAYKADPASDEAKLKVKF 96


>07_01_1023 + 8840754-8842988,8843189-8843362
          Length = 802

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +1

Query: 100 PVNNFNLTAYQGIW-YEISKFPNESEKNGKCSSAEYKLESDVVKVKNVHIIDGV 258
           P  N  +TA  G+W +++S   N S K G C  A     +D++  KN+ I+DGV
Sbjct: 299 PSTNLMITA--GVWGHDVS---NYSAKEGLCEEA-----NDIIPRKNLTIVDGV 342


>04_03_0673 -
           18562497-18563010,18563080-18563471,18563553-18563649,
           18563977-18564149,18564349-18564485,18564806-18564872
          Length = 459

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 103 VNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLESD 219
           V NFN+  + G WY IS   N +     C   E+++E D
Sbjct: 202 VKNFNMADFNGKWY-ISSGLNPTFDTFDCQLHEFRVEGD 239


>06_01_0084 + 675185-677389
          Length = 734

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 8/105 (7%)
 Frame = +1

Query: 115 NLTAYQGIWYEISKFPNESEKNGKCSSAEYKLESDVVKVKN-VHII-------DGVKKYI 270
           N+ A   +W ++++     EKNG   +  +     ++++KN +H            K+  
Sbjct: 574 NIYANASMWKDVARVRTAMEKNGLQKTPGWS----IIQLKNEIHTFYSGSTNHQQAKEIY 629

Query: 271 ERTAKLTDDANKAAKLTVTFKFGEISRDGSVQILATDYNNYAIAY 405
            R AKL ++      +  T    ++  D   Q+L T     AIA+
Sbjct: 630 SRLAKLIEEIKAVGYVPDTDSIHDVEDDVKAQLLNTHSEKLAIAF 674


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.131    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,547,024
Number of Sequences: 37544
Number of extensions: 219723
Number of successful extensions: 620
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)