Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0413
         (600 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35032| Best HMM Match : MED7 (HMM E-Value=7.6e-08)                  34   0.076
SB_21941| Best HMM Match : Kinesin (HMM E-Value=0)                     30   1.2  
SB_4060| Best HMM Match : zf-CCHC (HMM E-Value=3.6)                    30   1.2  
SB_10947| Best HMM Match : PH (HMM E-Value=1.3e-11)                    30   1.6  
SB_48642| Best HMM Match : EFG_IV (HMM E-Value=7.1)                    29   2.9  
SB_11244| Best HMM Match : M (HMM E-Value=2.5e-08)                     29   2.9  
SB_28082| Best HMM Match : A2M_comp (HMM E-Value=0)                    29   3.8  
SB_21384| Best HMM Match : 7tm_1 (HMM E-Value=8.6e-05)                 29   3.8  
SB_35427| Best HMM Match : A2M_comp (HMM E-Value=4.6e-05)              29   3.8  
SB_58447| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_8527| Best HMM Match : zf-C2H2 (HMM E-Value=4.3e-21)                27   8.8  
SB_1137| Best HMM Match : CC (HMM E-Value=2)                           27   8.8  

>SB_35032| Best HMM Match : MED7 (HMM E-Value=7.6e-08)
          Length = 418

 Score = 34.3 bits (75), Expect = 0.076
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +1

Query: 85  CPELKPVNNFNLTAYQGIWYEI-SKFPNES--EKNGKCSSAEYKLESD 219
           C  +  V   N+T+Y G WY++ S F  E   E+N  C +A+Y L  D
Sbjct: 235 CQGIDTVPTLNVTSYLGRWYQMYSDFIVEETFERNAVCVTADYTLRKD 282


>SB_21941| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 791

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 20/102 (19%), Positives = 39/102 (38%)
 Frame = +1

Query: 163 NESEKNGKCSSAEYKLESDVVKVKNVHIIDGVKKYIERTAKLTDDANKAAKLTVTFKFGE 342
           N  +  G+  + EY L    +++ N  I D + K      ++ +  +K   +        
Sbjct: 397 NSMQGKGRRRNREYLLHVSYLEIYNEEIRDLLVKNTRSNLEIKEHPDKGMYVKGLSSITV 456

Query: 343 ISRDGSVQILATDYNNYAIAYNCKYDDKKKSHQVFVWILSRN 468
              +   +IL     N ++   C   D  +SH +F+  L  N
Sbjct: 457 DCYEDMAEILEIGSANRSVGSTCMNTDSSRSHSIFIIDLQVN 498


>SB_4060| Best HMM Match : zf-CCHC (HMM E-Value=3.6)
          Length = 395

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
 Frame = +1

Query: 277 TAKLTDDANKAAKLTVTFK--FGEISRDGSV-QILATDYNNYAIAYNCKYDDKKKSHQVF 447
           T ++T+  +      + FK    EIS+ G+V +++ATD  +  I  + K +  +  HQ  
Sbjct: 129 TVQVTEAGSSNGMERLGFKNCMDEISKSGNVVKVVATD-RHVGIRSDLKKNHPECQHQFD 187

Query: 448 VWILSRN--KKLESDAKTAXDNFIXEHSKEIDS 540
           VW ++++  KKL   AK    N +    K + +
Sbjct: 188 VWHMAKSVTKKLTEAAKKKDTNDLLPWIKSVSN 220


>SB_10947| Best HMM Match : PH (HMM E-Value=1.3e-11)
          Length = 591

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = -3

Query: 229 LSPRHFPVCIQLKSICRSSQIRWEISRFHTRCLGKLSS*SCSPVSARGRCXRE*LQQSP 53
           L PR+   C++L + C SSQ + ++   H + L +L+       S+R       LQ  P
Sbjct: 318 LFPRYHIACLKLWTSCYSSQFKQDLLAKHAKLLLRLAEKDSLDTSSRPAFCTASLQHQP 376


>SB_48642| Best HMM Match : EFG_IV (HMM E-Value=7.1)
          Length = 508

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = +1

Query: 145 EISKFPNESEKNGKCSSAEYKLESDVVKVKNVHIIDGVK 261
           E+ ++  ESE+NGK SS    + S+ V +K + + DG K
Sbjct: 38  EVFEWRFESEENGKMSSV-MTIHSNTVPLKEIGLWDGAK 75


>SB_11244| Best HMM Match : M (HMM E-Value=2.5e-08)
          Length = 1381

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 24/105 (22%), Positives = 52/105 (49%)
 Frame = +1

Query: 193 SAEYKLESDVVKVKNVHIIDGVKKYIERTAKLTDDANKAAKLTVTFKFGEISRDGSVQIL 372
           S+   +E D ++++ V + D  K  +E+T K  D+AN+A+K  ++ K    SR  +   L
Sbjct: 578 SSGASVEKDNIRLQ-VQLNDATKD-LEKTRKKLDEANEASKKAISEKSVLQSRHNT---L 632

Query: 373 ATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLESDAKTAXDN 507
             +     I+     D+K         ++++NK+L+ +   + ++
Sbjct: 633 LVEMEKLQISVERTEDEKTVLQGEKNNLINKNKRLQKEIDASLED 677


>SB_28082| Best HMM Match : A2M_comp (HMM E-Value=0)
          Length = 1013

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +1

Query: 334 FGEISRDGSVQILATDYNNYAIAYNCKYDDKKKSHQVFVWILSR 465
           FGE  ++GS+ + A    ++A A    Y D+K   Q   W++S+
Sbjct: 504 FGERDKEGSMWLTAFVVKSFAQARKYIYIDEKALDQSIFWMVSK 547


>SB_21384| Best HMM Match : 7tm_1 (HMM E-Value=8.6e-05)
          Length = 442

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 155 NFPTNLRRTANALQLNTNWKVTW*KSRTCISSTASRSI*KGR 280
           NF T      +AL++   W VTW +   C  +T S  +  GR
Sbjct: 33  NFLTLFVFATDALRIRRFWGVTWWRDTRCSRATTSNCLKTGR 74


>SB_35427| Best HMM Match : A2M_comp (HMM E-Value=4.6e-05)
          Length = 264

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +1

Query: 334 FGEISRDGSVQILATDYNNYAIAYNCKYDDKKKSHQVFVWILSR 465
           FGE  ++GS+ + A    ++A A    Y D+K   Q   W++S+
Sbjct: 202 FGERDKEGSMWLTAFVVKSFAQARKYIYIDEKALDQSIFWMVSK 245


>SB_58447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 731

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 202 YKLESDVVKVKNVHIIDGVKKYIERTAKLTDDA 300
           Y+   + +K KN++I D  KKY E   +L+D A
Sbjct: 298 YQRALEDLKTKNLNIQDSAKKYAEMQHRLSDFA 330


>SB_8527| Best HMM Match : zf-C2H2 (HMM E-Value=4.3e-21)
          Length = 1049

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = +1

Query: 139 WYEISKFPNESEKNGKCSSAEYKLESDVVKVKN--VHIIDGVKKYIERTAKLTD 294
           W+E   F     K  +   A+ +LE++VVK+K   V + +   +  ++ AKL D
Sbjct: 472 WFETVFFYPSDNKYNEERGAQQRLEAEVVKLKQQVVDLAEEAAELQQQKAKLLD 525


>SB_1137| Best HMM Match : CC (HMM E-Value=2)
          Length = 410

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 226 KVKNVHIIDGVKKYIERTAKLTDDANK 306
           K+K  H+ D  +K ++RT  L DDA K
Sbjct: 356 KLKTNHLADLTEKEVQRTNGLLDDATK 382


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.131    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,414,520
Number of Sequences: 59808
Number of extensions: 260103
Number of successful extensions: 745
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)