Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0413
(600 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75955-1|CAB00111.2| 796|Caenorhabditis elegans Hypothetical pr... 34 0.067
AF328908-1|AAK01123.1| 796|Caenorhabditis elegans voltage-gated... 34 0.067
AF319616-1|AAG49526.1| 796|Caenorhabditis elegans CLC-type chlo... 34 0.067
Z81519-2|CAB04217.1| 468|Caenorhabditis elegans Hypothetical pr... 31 0.48
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for... 28 5.9
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for... 28 5.9
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei... 28 5.9
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei... 28 5.9
Z82280-9|CAB05263.3| 415|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z82275-2|CAC42314.2| 415|Caenorhabditis elegans Hypothetical pr... 27 7.7
U37430-5|AAB52674.2| 389|Caenorhabditis elegans Set (trithorax/... 27 7.7
>Z75955-1|CAB00111.2| 796|Caenorhabditis elegans Hypothetical
protein R07B7.1 protein.
Length = 796
Score = 34.3 bits (75), Expect = 0.067
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Frame = +1
Query: 313 KLTVTFKFGEISRDGSVQILATDYN--NYAIAYNCKYDD--KKKSHQVFVWILSRNK 471
+L + + ++ R S + L+ Y NY I+ N Y D KK SHQ+ +W +SRN+
Sbjct: 46 ELLFSRQLDDVGRTDSHEALSARYESLNYEISENRLYRDAEKKPSHQLTLWRISRNR 102
>AF328908-1|AAK01123.1| 796|Caenorhabditis elegans voltage-gated
chloride channelCLH-6 protein.
Length = 796
Score = 34.3 bits (75), Expect = 0.067
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Frame = +1
Query: 313 KLTVTFKFGEISRDGSVQILATDYN--NYAIAYNCKYDD--KKKSHQVFVWILSRNK 471
+L + + ++ R S + L+ Y NY I+ N Y D KK SHQ+ +W +SRN+
Sbjct: 46 ELLFSRQLDDVGRTDSHEALSARYESLNYEISENRLYRDAEKKPSHQLTLWRISRNR 102
>AF319616-1|AAG49526.1| 796|Caenorhabditis elegans CLC-type
chloride channel CLH-6 protein.
Length = 796
Score = 34.3 bits (75), Expect = 0.067
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Frame = +1
Query: 313 KLTVTFKFGEISRDGSVQILATDYN--NYAIAYNCKYDD--KKKSHQVFVWILSRNK 471
+L + + ++ R S + L+ Y NY I+ N Y D KK SHQ+ +W +SRN+
Sbjct: 46 ELLFSRQLDDVGRTDSHEALSARYESLNYEISENRLYRDAEKKPSHQLTLWRISRNR 102
>Z81519-2|CAB04217.1| 468|Caenorhabditis elegans Hypothetical
protein F29C12.5 protein.
Length = 468
Score = 31.5 bits (68), Expect = 0.48
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Frame = +1
Query: 148 ISKFPNESEKNGKCSSAEYKLESDVVKVKNVHIIDG-VKKYIERTAKL-TDDANKAAKLT 321
+S P +S KN S+ E+ VVK +N HI+ + + E KL D +A K
Sbjct: 129 MSGLPKKSPKNFDESNKEFSDGIVVVKHQNFHILKKFLAFHCEYLEKLFFGDFKEAGKAE 188
Query: 322 VTFKFGEISRDGSVQILATDYNNYAI 399
VT K IS +LA Y +YAI
Sbjct: 189 VTLK--AISSTDFHYLLAVLYEDYAI 212
>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
protein.
Length = 4280
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 94 LKPVNNFNLTAYQGIWYEIS-KFPNESEKNGKCSSAEYKLE 213
L P N NL + + +S + PN++ + KCS+ YKLE
Sbjct: 2426 LSPPTNLNLASPSNVQVRVSWQAPNQN--SWKCSAIRYKLE 2464
>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
protein.
Length = 4450
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 94 LKPVNNFNLTAYQGIWYEIS-KFPNESEKNGKCSSAEYKLE 213
L P N NL + + +S + PN++ + KCS+ YKLE
Sbjct: 2426 LSPPTNLNLASPSNVQVRVSWQAPNQN--SWKCSAIRYKLE 2464
>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
805, isoform b protein.
Length = 4450
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 94 LKPVNNFNLTAYQGIWYEIS-KFPNESEKNGKCSSAEYKLE 213
L P N NL + + +S + PN++ + KCS+ YKLE
Sbjct: 2426 LSPPTNLNLASPSNVQVRVSWQAPNQN--SWKCSAIRYKLE 2464
>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
805, isoform a protein.
Length = 4280
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 94 LKPVNNFNLTAYQGIWYEIS-KFPNESEKNGKCSSAEYKLE 213
L P N NL + + +S + PN++ + KCS+ YKLE
Sbjct: 2426 LSPPTNLNLASPSNVQVRVSWQAPNQN--SWKCSAIRYKLE 2464
>Z82280-9|CAB05263.3| 415|Caenorhabditis elegans Hypothetical
protein R05A10.1 protein.
Length = 415
Score = 27.5 bits (58), Expect = 7.7
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Frame = +1
Query: 103 VNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLESDVVKVK----NVHIIDGVKKYI 270
++ F + G+ + P E KNGK + E ++ K V+ I+G K+
Sbjct: 28 LHEFQMNNSAGVMSALEMLPKECSKNGKKYQPNEEFEIGNLRYKCQKYGVYTIEGCKRKD 87
Query: 271 ERTAKLTDDA 300
T KL + A
Sbjct: 88 GTTMKLGESA 97
>Z82275-2|CAC42314.2| 415|Caenorhabditis elegans Hypothetical
protein R05A10.1 protein.
Length = 415
Score = 27.5 bits (58), Expect = 7.7
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Frame = +1
Query: 103 VNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLESDVVKVK----NVHIIDGVKKYI 270
++ F + G+ + P E KNGK + E ++ K V+ I+G K+
Sbjct: 28 LHEFQMNNSAGVMSALEMLPKECSKNGKKYQPNEEFEIGNLRYKCQKYGVYTIEGCKRKD 87
Query: 271 ERTAKLTDDA 300
T KL + A
Sbjct: 88 GTTMKLGESA 97
>U37430-5|AAB52674.2| 389|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 12
protein.
Length = 389
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 219 RGESQERAYHRRRQEVYRKDGQAH 290
RGE+ +A H +R + Y+KDG H
Sbjct: 126 RGEAITKAEHNKRVKRYKKDGIKH 149
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.316 0.131 0.379
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,826,367
Number of Sequences: 27780
Number of extensions: 195042
Number of successful extensions: 588
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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