Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0413
         (600 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58070.1 68418.m07267 lipocalin, putative similar to temperat...    52   2e-07
At5g37190.1 68418.m04465 COP1-interacting protein 4 (CIP4) simil...    31   0.58 
At4g00930.1 68417.m00126 COP1-interacting protein 4.1 (CIP4.1) i...    30   1.3  
At5g60040.1 68418.m07529 DNA-directed RNA polymerase, putative s...    29   3.1  
At5g60350.1 68418.m07566 hypothetical protein                          28   5.4  
At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D) ribos...    28   5.4  
At5g17000.1 68418.m01991 NADP-dependent oxidoreductase, putative...    27   7.2  
At1g08550.1 68414.m00948 violaxanthin de-epoxidase precursor, pu...    27   9.5  

>At5g58070.1 68418.m07267 lipocalin, putative similar to temperature
           stress-induced lipocalin [Triticum aestivum] GI:18650668
          Length = 186

 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 39/134 (29%), Positives = 64/134 (47%), Gaps = 2/134 (1%)
 Frame = +1

Query: 91  ELKPVNNFNLTAYQGIWYEISKFPNESE-KNGKCSSAEYKLESD-VVKVKNVHIIDGVKK 264
           E++ V   N+  Y G WYEI+ FP+  + KNG  + A Y L  D  + V N    +G + 
Sbjct: 6   EMEVVKGLNVERYMGRWYEIASFPSRFQPKNGVDTRATYTLNPDGTIHVLNETWSNGKRG 65

Query: 265 YIERTAKLTDDANKAAKLTVTFKFGEISRDGSVQILATDYNNYAIAYNCKYDDKKKSHQV 444
           +IE +A   D  +  AKL V F          +  +  DY    I  + ++    +  + 
Sbjct: 66  FIEGSAYKADPKSDEAKLKVKFYVPPFL---PIIPVTGDYWVLYIDPDYQHALIGQPSRS 122

Query: 445 FVWILSRNKKLESD 486
           ++WILSR  ++E +
Sbjct: 123 YLWILSRTAQMEEE 136


>At5g37190.1 68418.m04465 COP1-interacting protein 4 (CIP4) similar
           to COP1-interacting protein 4 (CIP4) [Arabidopsis
           thaliana] GI:13160646; supporting cDNA
           gi|13160645|dbj|AB036832.1|;
          Length = 876

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 20/75 (26%), Positives = 36/75 (48%)
 Frame = +1

Query: 172 EKNGKCSSAEYKLESDVVKVKNVHIIDGVKKYIERTAKLTDDANKAAKLTVTFKFGEISR 351
           EK+GK SS   K +  +  V+   ++D +++  E    L     K++K T   K   ++ 
Sbjct: 515 EKSGKKSSKRSKKKDSLNIVEEAQVVDSLQQKKEAEENLEKSGKKSSKKTK--KKDSLNI 572

Query: 352 DGSVQILATDYNNYA 396
               Q+L+ + NN A
Sbjct: 573 VEEAQVLSVEVNNVA 587


>At4g00930.1 68417.m00126 COP1-interacting protein 4.1 (CIP4.1)
           identical to cDNA CIP4.1 mRNA for COP1-interacting
           protein 4.1,  GI:13160649
          Length = 976

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 25/106 (23%), Positives = 47/106 (44%)
 Frame = +1

Query: 172 EKNGKCSSAEYKLESDVVKVKNVHIIDGVKKYIERTAKLTDDANKAAKLTVTFKFGEISR 351
           EK+GK SS   K +  +  V+   ++D +++  E    L     K++K +   K   ++ 
Sbjct: 665 EKSGKKSSKRSKKKDSLNIVEEAQVVDSLQQKKEAEENLEKSGKKSSKRSK--KKDSLNI 722

Query: 352 DGSVQILATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLESDA 489
               Q+L+ + NN A       ++ K +  +F       K  ES+A
Sbjct: 723 VEEAQVLSVEVNNVAQEEASPINNPKDTDALFT---PAKKNTESNA 765


>At5g60040.1 68418.m07529 DNA-directed RNA polymerase, putative
           similar to SP|P04051 DNA-directed RNA polymerase III
           largest subunit (EC 2.7.7.6) {Saccharomyces cerevisiae};
           contains InterPro accession IPR000722: RNA polymerase,
           alpha subunit
          Length = 1328

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +1

Query: 265 YIERTAKLTDDANKAAKLTVTFKFGEISRDGSVQILATDYNNYAIA 402
           Y   +  ++    KA      F  G  ++DG   IL  DYN++A A
Sbjct: 609 YFRNSELISGQLGKATLALDIFPLGNGNKDGLYSILLRDYNSHAAA 654


>At5g60350.1 68418.m07566 hypothetical protein
          Length = 292

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
 Frame = +1

Query: 169 SEKNGK--CSSAEYKLESDVVKVKNVHIIDGVKKYIERTAKLTDDANKAAKLTVTFKFGE 342
           S++ GK   ++A+ K+E+D++ VKN    +  +K IE+   +++D  +  K TV +    
Sbjct: 23  SKRTGKKEAAAAKTKVEADLIIVKNEDKSNEEQKKIEKCWMMSED-GEGGKSTVEYDGSS 81

Query: 343 ISRDGSV 363
           I     V
Sbjct: 82  ILNTSGV 88


>At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D)
           ribosomal protein L9, cytosolic - garden pea,
           PIR2:S19978
          Length = 194

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
 Frame = +1

Query: 94  LKPVNNFNLTAYQGIWYEI----SKFPNESEKNGKCSSAEYKLESDVVKVKNVHIIDGVK 261
           L  V+N      QG  Y +    + FP  +  +G   S E +      KV+ V ++DGVK
Sbjct: 77  LSHVDNLIAGVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNFLGEKKVRKVEMLDGVK 136

Query: 262 KYIERTAKLTDD 297
             I R+ K+ D+
Sbjct: 137 --IVRSEKVKDE 146


>At5g17000.1 68418.m01991 NADP-dependent oxidoreductase, putative
           strong similarity to probable NADP-dependent
           oxidoreductase (zeta-crystallin homolog) P1
           [SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430],
           Arabidopsis thaliana
          Length = 345

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
 Frame = +1

Query: 148 ISKFPNESEKNGKCSSAEYKLE--SDVVKVKNVHI 246
           +S FP ES+ + K ++ E+KL   S+ V VKN+++
Sbjct: 14  VSGFPKESDFDFKTTTVEFKLPGGSNSVLVKNLYL 48


>At1g08550.1 68414.m00948 violaxanthin de-epoxidase precursor,
           putative (AVDE1) similar to EST gb|N37612
          Length = 462

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +1

Query: 103 VNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLESDVVKVKNV 240
           V NFN++ + G WY I+   N +     C   E+  E D   V N+
Sbjct: 204 VQNFNISDFNGKWY-ITSGLNPTFDAFDCQLHEFHTEGDNKLVGNI 248


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.131    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,207,787
Number of Sequences: 28952
Number of extensions: 181472
Number of successful extensions: 500
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)