Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0411
         (534 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    26   3.1  
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    25   5.4  
SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit S4|S...    25   9.4  
SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom...    25   9.4  

>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = -2

Query: 260 GLPWRAGHVGVEPIASNRSTTSIQTSHETELMKRQRGESEAFS 132
           G P     +  E IA ++ ++++Q+ HET ++KR R  ++ FS
Sbjct: 6   GKPENVLRLADELIALDQHSSALQSLHETIVLKRSR-NAQGFS 47


>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 161 RQRGESEAFSAGHISPVTLTLDRLRS*I*GNQ 66
           +QR ++   S GH+SP  + LD + +   GN+
Sbjct: 239 KQREKTRLESNGHVSPRDMDLDEIENVFEGNK 270


>SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 218 ASNRSTTSIQTSHETELMKRQRGESE 141
           AS+ +T SIQ   +TE +  + GE+E
Sbjct: 156 ASSNNTPSIQDGKQTEQVSSKDGENE 181


>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +3

Query: 213 GGNRFDSDMPRPPRKSGD 266
           GG  F   MPR PRK  D
Sbjct: 92  GGGMFGGGMPRGPRKGKD 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,047,113
Number of Sequences: 5004
Number of extensions: 39078
Number of successful extensions: 98
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)