Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0411
         (534 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0597 - 18859601-18859818,18860914-18861083,18861250-188613...    29   3.1  
01_04_0112 - 16127785-16128279,16128883-16128986,16129304-16129454     28   5.4  
12_02_0539 + 20141263-20141296,20141957-20143428                       27   7.2  
07_03_0808 - 21668100-21669092                                         27   7.2  
06_01_0845 - 6430419-6431195                                           27   7.2  
04_04_0909 - 29312875-29313135,29313235-29313556,29313676-293139...    27   7.2  
02_02_0379 + 9565001-9565515,9565553-9565833,9565884-9566084,956...    27   7.2  
01_01_0066 - 513578-513730,513809-513920,514000-514163,514369-51...    27   7.2  

>09_04_0597 -
           18859601-18859818,18860914-18861083,18861250-18861303,
           18862759-18863284,18864465-18864663,18866787-18866852,
           18866999-18867300,18867394-18867634,18867716-18867973,
           18868076-18868207
          Length = 721

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = -2

Query: 272 EEIAGLPWRAGHVGVEPIASNRSTTSIQ--TSHETELMKRQRGESEAFSAGHISPVT 108
           EE++ + W A  V  E  A  R++ + +   + E EL ++++ ES  F   H + V+
Sbjct: 648 EEVSPIAWAAPSVHQEGEAGERASHADEPPEAEELELTRKRKAESPLFEEAHSNHVS 704


>01_04_0112 - 16127785-16128279,16128883-16128986,16129304-16129454
          Length = 249

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 272 EEIAGLPWRAGHVGVEPIASN 210
           E+ A LPWR  H+ V P+AS+
Sbjct: 179 EQQAHLPWRRPHLPVSPLASS 199


>12_02_0539 + 20141263-20141296,20141957-20143428
          Length = 501

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/21 (57%), Positives = 17/21 (80%)
 Frame = +1

Query: 97  SSVRVTGEMCPALNASLSPLC 159
           SS+RV  ++CPA++A LS LC
Sbjct: 71  SSIRVGSDLCPAIDA-LSALC 90


>07_03_0808 - 21668100-21669092
          Length = 330

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +2

Query: 230 LRHAPPSTEVRRFPP 274
           LRH PPST  RR PP
Sbjct: 154 LRHLPPSTAPRRTPP 168


>06_01_0845 - 6430419-6431195
          Length = 258

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 191 GCWLLSDWRQSVRLRHAPPS 250
           GCW++  WR+  RLR  PP+
Sbjct: 70  GCWVMYGWRR--RLRRLPPT 87


>04_04_0909 -
           29312875-29313135,29313235-29313556,29313676-29313923,
           29314032-29314259
          Length = 352

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 236 HAPPSTEVRRFPPDKKKSIRLKSTVSVSTFK 328
           H P S  ++ +  D KK+IRL ++ +V T K
Sbjct: 99  HMPESERLKCYSDDPKKAIRLSTSFNVRTEK 129


>02_02_0379 +
           9565001-9565515,9565553-9565833,9565884-9566084,
           9566253-9566309,9566955-9567019,9567199-9567420
          Length = 446

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = +2

Query: 170 ALSHARFGCWLLSDWRQSVRLRHAPPS 250
           A++  RF   + SDWRQS  LRH PPS
Sbjct: 22  AINVVRFHA-VCSDWRQS--LRHIPPS 45


>01_01_0066 -
           513578-513730,513809-513920,514000-514163,514369-514521,
           514598-514736,514823-514923,514995-515666,515953-516038,
           516112-516777,516874-517128,517231-517358,518645-518799,
           518880-519133,519186-519260,519324-519399,519511-519644,
           519871-520153,520692-520850,520940-521038,521142-521310,
           521423-521653,522002-522114,524179-524310,524389-524469,
           525641-525763
          Length = 1570

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 273 GGNRRTSVEGGACRSRTDCLQSLNNQHPNL 184
           GG  R SV GG  R+R D L     + PN+
Sbjct: 116 GGGGRESVYGGMKRARDDALMGSQLKRPNV 145


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,769,392
Number of Sequences: 37544
Number of extensions: 284569
Number of successful extensions: 674
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)