Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0411
         (534 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59580| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.45 
SB_54138| Best HMM Match : rve (HMM E-Value=6.8e-24)                   28   5.5  
SB_51625| Best HMM Match : LRR_1 (HMM E-Value=2.7e-10)                 28   5.5  
SB_25491| Best HMM Match : Peptidase_M50 (HMM E-Value=2.2)             28   5.5  
SB_3464| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.5  
SB_56497| Best HMM Match : Extensin_2 (HMM E-Value=0.16)               28   5.5  
SB_55186| Best HMM Match : TPR_2 (HMM E-Value=0.91)                    27   7.3  
SB_25826| Best HMM Match : Ank (HMM E-Value=6.7e-37)                   27   7.3  
SB_18742| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_15470| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_59580| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 999

 Score = 31.5 bits (68), Expect = 0.45
 Identities = 20/54 (37%), Positives = 27/54 (50%)
 Frame = -3

Query: 268 KSPDFRGGRGMSESNRLPPIAQQPASKPRMRQSS*KGKGAKVKRLVRGTSLPSL 107
           K    R  RG+SE  + P + Q  A KPRMR+        + K + R +SL SL
Sbjct: 681 KRGPMRADRGISEMTKSPHLQQ--AVKPRMREECVDDFSPRYKTMGRSSSLSSL 732


>SB_54138| Best HMM Match : rve (HMM E-Value=6.8e-24)
          Length = 2160

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 73   P*IYERSLSSVRVTGEMCPALNASLSPLCLFM 168
            P IY+ S  + R+ G+ CP LN + S +  F+
Sbjct: 1358 PDIYQVSFEAFRLRGQDCPVLNVNKSSVPQFL 1389


>SB_51625| Best HMM Match : LRR_1 (HMM E-Value=2.7e-10)
          Length = 212

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -1

Query: 375 RELQRYALTFPPRRNGLKVETETVDFNLIDFFLSGGNRRT 256
           R L+ + L  PPR + L +    +     DFFL   N RT
Sbjct: 100 RRLRNFPLPLPPRTSTLLLNDNRLSLLRYDFFLGLNNIRT 139


>SB_25491| Best HMM Match : Peptidase_M50 (HMM E-Value=2.2)
          Length = 771

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +3

Query: 390 FFY*TISNDVRSCL*PINYLEMLFIKVQTAISDV 491
           F +  ++N  RSC+  +N  + ++  V+T++SDV
Sbjct: 629 FMFLQLNNSTRSCVNSVNCAKGVYKSVRTSLSDV 662


>SB_3464| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1462

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -2

Query: 224  PIASNRSTTSIQTSHETELMKRQRGESEAFSAGHIS-PVTL-TLDRLR 87
            P+A  RST       E  + +R RG S+  +A H   P  L ++DR+R
Sbjct: 1105 PVAMYRSTLPTHNGGEAHVRRRTRGGSQGVTAMHAKLPKGLASIDRVR 1152


>SB_56497| Best HMM Match : Extensin_2 (HMM E-Value=0.16)
          Length = 814

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 73  P*IYERSLSSVRVTGEMCPALNASLSPLCLFM 168
           P IY+ S  + R+ G+ CP LN + S +  F+
Sbjct: 12  PDIYQVSFEAFRLRGQDCPVLNVNKSSVPQFL 43


>SB_55186| Best HMM Match : TPR_2 (HMM E-Value=0.91)
          Length = 571

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 250 GGRGMSESNRLPPIAQQPASKPRMRQSS*KGKG 152
           GG   + SN +PP  QQPA+  + ++   K KG
Sbjct: 537 GGATSAPSNVVPPRQQQPAAAKKKQRPKGKKKG 569


>SB_25826| Best HMM Match : Ank (HMM E-Value=6.7e-37)
          Length = 1041

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = +2

Query: 212 WRQSVRL-RHAPPSTEVRRFPPDKKKSIRLKSTVSVSTFKPF 334
           W Q   L RHAP +  VR  PP   K+     T+ +S    F
Sbjct: 568 WTQPALLSRHAPAALSVRTHPPITAKARNNPGTIRLSGISSF 609


>SB_18742| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 170 ALSHARFGCWLLSDWRQSVRLRHAPPST 253
           ALS  +   W +SDW +++  RH   ST
Sbjct: 62  ALSSLKMYSWNMSDWMKALACRHLASST 89


>SB_15470| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -2

Query: 215 SNRSTTSIQTSHETELMKRQRGESEAFSAGHISPVTLTLDRL 90
           S  +  S  TSHE EL     GE+E  S+G  S V L  D++
Sbjct: 86  SGEAELSSGTSHEVELFSGTGGEAE-LSSGTSSEVELFRDKV 126


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,482,441
Number of Sequences: 59808
Number of extensions: 298682
Number of successful extensions: 766
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)