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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0411
         (534 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF231056-1|AAG33967.1| 2285|Homo sapiens BRG1-Associated Factor ...    31   1.9  
AB001895-1|BAA23269.1| 1142|Homo sapiens B120 protein.                 31   1.9  
S73849-1|AAB31735.1|  873|Homo sapiens very low density lipoprot...    29   7.8  
L22431-1|AAA61344.1|  873|Homo sapiens very low density lipoprot...    29   7.8  
L20470-1|AAA53684.1|  873|Homo sapiens very low density lipoprot...    29   7.8  
D16532-1|BAA03969.1|  873|Homo sapiens very low density lipoprot...    29   7.8  
D16494-1|BAA03946.1|  845|Homo sapiens very low density lipoprot...    29   7.8  
D16493-1|BAA03945.1|  873|Homo sapiens very low density lipoprot...    29   7.8  
DQ067198-1|AAY46157.1|  873|Homo sapiens very low density lipopr...    29   7.8  
BC142653-1|AAI42654.1|  845|Homo sapiens very low density lipopr...    29   7.8  
BC007412-1|AAH07412.1|  193|Homo sapiens chromosome 14 open read...    29   7.8  
AL450467-3|CAH72455.1|  845|Homo sapiens very low density lipopr...    29   7.8  
AL450467-2|CAH72454.1|  873|Homo sapiens very low density lipopr...    29   7.8  
AL450467-1|CAH72452.1|  173|Homo sapiens very low density lipopr...    29   7.8  
AK223103-1|BAD96823.1|  193|Homo sapiens chromosome 14 open read...    29   7.8  
AK223092-1|BAD96812.1|  193|Homo sapiens chromosome 14 open read...    29   7.8  
AB208822-1|BAD92059.1|  555|Homo sapiens Very low-density lipopr...    29   7.8  

>AF231056-1|AAG33967.1| 2285|Homo sapiens BRG1-Associated Factor 250a
            protein.
          Length = 2285

 Score = 31.5 bits (68), Expect = 1.9
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 265  SPDFRGGRGMSESNRLPPIAQQPASKPRMRQSS 167
            S  +  G+G+ +  +LPP   QPAS+P+  Q S
Sbjct: 1390 SVPYSTGQGLPQQQQLPPAQPQPASQPQAAQPS 1422


>AB001895-1|BAA23269.1| 1142|Homo sapiens B120 protein.
          Length = 1142

 Score = 31.5 bits (68), Expect = 1.9
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 265  SPDFRGGRGMSESNRLPPIAQQPASKPRMRQSS 167
            S  +  G+G+ +  +LPP   QPAS+P+  Q S
Sbjct: 1007 SVPYSTGQGLPQQQQLPPAQPQPASQPQAAQPS 1039


>S73849-1|AAB31735.1|  873|Homo sapiens very low density lipoprotein
           receptor protein.
          Length = 873

 Score = 29.5 bits (63), Expect = 7.8
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 313 CLNLQAIPSRWKCQG 357
           C N Q +PSRWKC G
Sbjct: 79  CNNGQCVPSRWKCDG 93


>L22431-1|AAA61344.1|  873|Homo sapiens very low density lipoprotein
           receptor protein.
          Length = 873

 Score = 29.5 bits (63), Expect = 7.8
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 313 CLNLQAIPSRWKCQG 357
           C N Q +PSRWKC G
Sbjct: 79  CNNGQCVPSRWKCDG 93


>L20470-1|AAA53684.1|  873|Homo sapiens very low density lipoprotein
           receptor protein.
          Length = 873

 Score = 29.5 bits (63), Expect = 7.8
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 313 CLNLQAIPSRWKCQG 357
           C N Q +PSRWKC G
Sbjct: 79  CNNGQCVPSRWKCDG 93


>D16532-1|BAA03969.1|  873|Homo sapiens very low density lipoprotein
           receptor protein.
          Length = 873

 Score = 29.5 bits (63), Expect = 7.8
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 313 CLNLQAIPSRWKCQG 357
           C N Q +PSRWKC G
Sbjct: 79  CNNGQCVPSRWKCDG 93


>D16494-1|BAA03946.1|  845|Homo sapiens very low density lipoprotein
           receptor protein.
          Length = 845

 Score = 29.5 bits (63), Expect = 7.8
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 313 CLNLQAIPSRWKCQG 357
           C N Q +PSRWKC G
Sbjct: 79  CNNGQCVPSRWKCDG 93


>D16493-1|BAA03945.1|  873|Homo sapiens very low density lipoprotein
           receptor protein.
          Length = 873

 Score = 29.5 bits (63), Expect = 7.8
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 313 CLNLQAIPSRWKCQG 357
           C N Q +PSRWKC G
Sbjct: 79  CNNGQCVPSRWKCDG 93


>DQ067198-1|AAY46157.1|  873|Homo sapiens very low density
           lipoprotein receptor protein.
          Length = 873

 Score = 29.5 bits (63), Expect = 7.8
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 313 CLNLQAIPSRWKCQG 357
           C N Q +PSRWKC G
Sbjct: 79  CNNGQCVPSRWKCDG 93


>BC142653-1|AAI42654.1|  845|Homo sapiens very low density
           lipoprotein receptor protein.
          Length = 845

 Score = 29.5 bits (63), Expect = 7.8
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 313 CLNLQAIPSRWKCQG 357
           C N Q +PSRWKC G
Sbjct: 79  CNNGQCVPSRWKCDG 93


>BC007412-1|AAH07412.1|  193|Homo sapiens chromosome 14 open reading
           frame 153 protein.
          Length = 193

 Score = 29.5 bits (63), Expect = 7.8
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = -3

Query: 373 GIAKICPDISTAKEWLEG*DRNSRLQPDRLFFVRRKSP 260
           G+++ CP   +  +W+   D+ S L+P   +    +SP
Sbjct: 41  GVSRFCPPRKSCHDWIGPPDKYSNLRPVHFYIPENESP 78


>AL450467-3|CAH72455.1|  845|Homo sapiens very low density
           lipoprotein receptor protein.
          Length = 845

 Score = 29.5 bits (63), Expect = 7.8
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 313 CLNLQAIPSRWKCQG 357
           C N Q +PSRWKC G
Sbjct: 79  CNNGQCVPSRWKCDG 93


>AL450467-2|CAH72454.1|  873|Homo sapiens very low density
           lipoprotein receptor protein.
          Length = 873

 Score = 29.5 bits (63), Expect = 7.8
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 313 CLNLQAIPSRWKCQG 357
           C N Q +PSRWKC G
Sbjct: 79  CNNGQCVPSRWKCDG 93


>AL450467-1|CAH72452.1|  173|Homo sapiens very low density
           lipoprotein receptor protein.
          Length = 173

 Score = 29.5 bits (63), Expect = 7.8
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 313 CLNLQAIPSRWKCQG 357
           C N Q +PSRWKC G
Sbjct: 79  CNNGQCVPSRWKCDG 93


>AK223103-1|BAD96823.1|  193|Homo sapiens chromosome 14 open reading
           frame 153 variant protein.
          Length = 193

 Score = 29.5 bits (63), Expect = 7.8
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = -3

Query: 373 GIAKICPDISTAKEWLEG*DRNSRLQPDRLFFVRRKSP 260
           G+++ CP   +  +W+   D+ S L+P   +    +SP
Sbjct: 41  GVSRFCPPRKSCHDWIGPPDKYSNLRPVHFYIPENESP 78


>AK223092-1|BAD96812.1|  193|Homo sapiens chromosome 14 open reading
           frame 153 variant protein.
          Length = 193

 Score = 29.5 bits (63), Expect = 7.8
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = -3

Query: 373 GIAKICPDISTAKEWLEG*DRNSRLQPDRLFFVRRKSP 260
           G+++ CP   +  +W+   D+ S L+P   +    +SP
Sbjct: 41  GVSRFCPPRKSCHDWIGPPDKYSNLRPVHFYIPENESP 78


>AB208822-1|BAD92059.1|  555|Homo sapiens Very low-density
           lipoprotein receptor precursor variant protein.
          Length = 555

 Score = 29.5 bits (63), Expect = 7.8
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 313 CLNLQAIPSRWKCQG 357
           C N Q +PSRWKC G
Sbjct: 136 CNNGQCVPSRWKCDG 150


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,805,811
Number of Sequences: 237096
Number of extensions: 1436018
Number of successful extensions: 2912
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2912
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5216942984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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