Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0411
(534 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF231056-1|AAG33967.1| 2285|Homo sapiens BRG1-Associated Factor ... 31 1.9
AB001895-1|BAA23269.1| 1142|Homo sapiens B120 protein. 31 1.9
S73849-1|AAB31735.1| 873|Homo sapiens very low density lipoprot... 29 7.8
L22431-1|AAA61344.1| 873|Homo sapiens very low density lipoprot... 29 7.8
L20470-1|AAA53684.1| 873|Homo sapiens very low density lipoprot... 29 7.8
D16532-1|BAA03969.1| 873|Homo sapiens very low density lipoprot... 29 7.8
D16494-1|BAA03946.1| 845|Homo sapiens very low density lipoprot... 29 7.8
D16493-1|BAA03945.1| 873|Homo sapiens very low density lipoprot... 29 7.8
DQ067198-1|AAY46157.1| 873|Homo sapiens very low density lipopr... 29 7.8
BC142653-1|AAI42654.1| 845|Homo sapiens very low density lipopr... 29 7.8
BC007412-1|AAH07412.1| 193|Homo sapiens chromosome 14 open read... 29 7.8
AL450467-3|CAH72455.1| 845|Homo sapiens very low density lipopr... 29 7.8
AL450467-2|CAH72454.1| 873|Homo sapiens very low density lipopr... 29 7.8
AL450467-1|CAH72452.1| 173|Homo sapiens very low density lipopr... 29 7.8
AK223103-1|BAD96823.1| 193|Homo sapiens chromosome 14 open read... 29 7.8
AK223092-1|BAD96812.1| 193|Homo sapiens chromosome 14 open read... 29 7.8
AB208822-1|BAD92059.1| 555|Homo sapiens Very low-density lipopr... 29 7.8
>AF231056-1|AAG33967.1| 2285|Homo sapiens BRG1-Associated Factor 250a
protein.
Length = 2285
Score = 31.5 bits (68), Expect = 1.9
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -3
Query: 265 SPDFRGGRGMSESNRLPPIAQQPASKPRMRQSS 167
S + G+G+ + +LPP QPAS+P+ Q S
Sbjct: 1390 SVPYSTGQGLPQQQQLPPAQPQPASQPQAAQPS 1422
>AB001895-1|BAA23269.1| 1142|Homo sapiens B120 protein.
Length = 1142
Score = 31.5 bits (68), Expect = 1.9
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -3
Query: 265 SPDFRGGRGMSESNRLPPIAQQPASKPRMRQSS 167
S + G+G+ + +LPP QPAS+P+ Q S
Sbjct: 1007 SVPYSTGQGLPQQQQLPPAQPQPASQPQAAQPS 1039
>S73849-1|AAB31735.1| 873|Homo sapiens very low density lipoprotein
receptor protein.
Length = 873
Score = 29.5 bits (63), Expect = 7.8
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 313 CLNLQAIPSRWKCQG 357
C N Q +PSRWKC G
Sbjct: 79 CNNGQCVPSRWKCDG 93
>L22431-1|AAA61344.1| 873|Homo sapiens very low density lipoprotein
receptor protein.
Length = 873
Score = 29.5 bits (63), Expect = 7.8
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 313 CLNLQAIPSRWKCQG 357
C N Q +PSRWKC G
Sbjct: 79 CNNGQCVPSRWKCDG 93
>L20470-1|AAA53684.1| 873|Homo sapiens very low density lipoprotein
receptor protein.
Length = 873
Score = 29.5 bits (63), Expect = 7.8
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 313 CLNLQAIPSRWKCQG 357
C N Q +PSRWKC G
Sbjct: 79 CNNGQCVPSRWKCDG 93
>D16532-1|BAA03969.1| 873|Homo sapiens very low density lipoprotein
receptor protein.
Length = 873
Score = 29.5 bits (63), Expect = 7.8
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 313 CLNLQAIPSRWKCQG 357
C N Q +PSRWKC G
Sbjct: 79 CNNGQCVPSRWKCDG 93
>D16494-1|BAA03946.1| 845|Homo sapiens very low density lipoprotein
receptor protein.
Length = 845
Score = 29.5 bits (63), Expect = 7.8
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 313 CLNLQAIPSRWKCQG 357
C N Q +PSRWKC G
Sbjct: 79 CNNGQCVPSRWKCDG 93
>D16493-1|BAA03945.1| 873|Homo sapiens very low density lipoprotein
receptor protein.
Length = 873
Score = 29.5 bits (63), Expect = 7.8
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 313 CLNLQAIPSRWKCQG 357
C N Q +PSRWKC G
Sbjct: 79 CNNGQCVPSRWKCDG 93
>DQ067198-1|AAY46157.1| 873|Homo sapiens very low density
lipoprotein receptor protein.
Length = 873
Score = 29.5 bits (63), Expect = 7.8
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 313 CLNLQAIPSRWKCQG 357
C N Q +PSRWKC G
Sbjct: 79 CNNGQCVPSRWKCDG 93
>BC142653-1|AAI42654.1| 845|Homo sapiens very low density
lipoprotein receptor protein.
Length = 845
Score = 29.5 bits (63), Expect = 7.8
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 313 CLNLQAIPSRWKCQG 357
C N Q +PSRWKC G
Sbjct: 79 CNNGQCVPSRWKCDG 93
>BC007412-1|AAH07412.1| 193|Homo sapiens chromosome 14 open reading
frame 153 protein.
Length = 193
Score = 29.5 bits (63), Expect = 7.8
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = -3
Query: 373 GIAKICPDISTAKEWLEG*DRNSRLQPDRLFFVRRKSP 260
G+++ CP + +W+ D+ S L+P + +SP
Sbjct: 41 GVSRFCPPRKSCHDWIGPPDKYSNLRPVHFYIPENESP 78
>AL450467-3|CAH72455.1| 845|Homo sapiens very low density
lipoprotein receptor protein.
Length = 845
Score = 29.5 bits (63), Expect = 7.8
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 313 CLNLQAIPSRWKCQG 357
C N Q +PSRWKC G
Sbjct: 79 CNNGQCVPSRWKCDG 93
>AL450467-2|CAH72454.1| 873|Homo sapiens very low density
lipoprotein receptor protein.
Length = 873
Score = 29.5 bits (63), Expect = 7.8
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 313 CLNLQAIPSRWKCQG 357
C N Q +PSRWKC G
Sbjct: 79 CNNGQCVPSRWKCDG 93
>AL450467-1|CAH72452.1| 173|Homo sapiens very low density
lipoprotein receptor protein.
Length = 173
Score = 29.5 bits (63), Expect = 7.8
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 313 CLNLQAIPSRWKCQG 357
C N Q +PSRWKC G
Sbjct: 79 CNNGQCVPSRWKCDG 93
>AK223103-1|BAD96823.1| 193|Homo sapiens chromosome 14 open reading
frame 153 variant protein.
Length = 193
Score = 29.5 bits (63), Expect = 7.8
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = -3
Query: 373 GIAKICPDISTAKEWLEG*DRNSRLQPDRLFFVRRKSP 260
G+++ CP + +W+ D+ S L+P + +SP
Sbjct: 41 GVSRFCPPRKSCHDWIGPPDKYSNLRPVHFYIPENESP 78
>AK223092-1|BAD96812.1| 193|Homo sapiens chromosome 14 open reading
frame 153 variant protein.
Length = 193
Score = 29.5 bits (63), Expect = 7.8
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = -3
Query: 373 GIAKICPDISTAKEWLEG*DRNSRLQPDRLFFVRRKSP 260
G+++ CP + +W+ D+ S L+P + +SP
Sbjct: 41 GVSRFCPPRKSCHDWIGPPDKYSNLRPVHFYIPENESP 78
>AB208822-1|BAD92059.1| 555|Homo sapiens Very low-density
lipoprotein receptor precursor variant protein.
Length = 555
Score = 29.5 bits (63), Expect = 7.8
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 313 CLNLQAIPSRWKCQG 357
C N Q +PSRWKC G
Sbjct: 136 CNNGQCVPSRWKCDG 150
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,805,811
Number of Sequences: 237096
Number of extensions: 1436018
Number of successful extensions: 2912
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2912
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5216942984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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