Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0411
         (534 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53336-5|AAO21380.1|  271|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U53336-4|AAA96177.2|  290|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AC084197-3|AAN63427.1|  173|Caenorhabditis elegans Histone h1 li...    29   2.8  
AC084197-2|AAM44399.1|  241|Caenorhabditis elegans Histone h1 li...    29   2.8  
AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical ...    28   3.7  
U97403-2|AAB52472.2|  649|Caenorhabditis elegans Hypothetical pr...    27   8.5  
AF016450-3|AAB65992.3|  811|Caenorhabditis elegans Hypothetical ...    27   8.5  
AC006621-2|AAK68262.2|  544|Caenorhabditis elegans Hypothetical ...    27   8.5  

>U53336-5|AAO21380.1|  271|Caenorhabditis elegans Hypothetical
           protein K07C11.7b protein.
          Length = 271

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 93  TTFINLRQSNKVHSVRYTMIFFYCPCRQMS 4
           TTFIN  Q NK + ++   I FY P + +S
Sbjct: 242 TTFINAAQCNKGNQIQTRPIVFYIPKKTLS 271


>U53336-4|AAA96177.2|  290|Caenorhabditis elegans Hypothetical
           protein K07C11.7a protein.
          Length = 290

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 93  TTFINLRQSNKVHSVRYTMIFFYCPCRQMS 4
           TTFIN  Q NK + ++   I FY P + +S
Sbjct: 261 TTFINAAQCNKGNQIQTRPIVFYIPKKTLS 290


>AC084197-3|AAN63427.1|  173|Caenorhabditis elegans Histone h1 like
           protein 2, isoformb protein.
          Length = 173

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -2

Query: 197 SIQTSHETELMKRQRGESEAFSAGHISPVTLT 102
           S    HET  + RQ G    +  G  SP T+T
Sbjct: 10  SFGVEHETGYVSRQSGRGRVYKGGGYSPFTIT 41


>AC084197-2|AAM44399.1|  241|Caenorhabditis elegans Histone h1 like
           protein 2, isoforma protein.
          Length = 241

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -2

Query: 197 SIQTSHETELMKRQRGESEAFSAGHISPVTLT 102
           S    HET  + RQ G    +  G  SP T+T
Sbjct: 10  SFGVEHETGYVSRQSGRGRVYKGGGYSPFTIT 41


>AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical
           protein Y106G6D.7 protein.
          Length = 948

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +2

Query: 203 LSDWRQSVRLRHAPPSTEVRRFPPDKKKSIRLKSTVSVSTFKPFLRG-GNVR 355
           LS+ R    + + PP   + +FPP+K+   +L +   VS+ +  ++G GN R
Sbjct: 205 LSNTRSLPPVNNPPPPHPIPQFPPEKQFGNKLGNNNDVSSRENHIQGSGNER 256


>U97403-2|AAB52472.2|  649|Caenorhabditis elegans Hypothetical
           protein T10E9.4 protein.
          Length = 649

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 270 GNRRTSVEGGACRSRTDC 217
           G  RT V+G AC S  DC
Sbjct: 506 GEERTEVKGSACSSNKDC 523


>AF016450-3|AAB65992.3|  811|Caenorhabditis elegans Hypothetical
           protein B0238.13 protein.
          Length = 811

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 27/80 (33%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
 Frame = +1

Query: 163 FMSSVSCEVWMLVVERLEAIGSTPTCPALHGSPAISS*QKKVYQVEVYCF----CLNLQA 330
           F  SV  E W    E L+     P CP    S A+ +    V Q   + F    CLNL  
Sbjct: 380 FKKSVEAEKW---TEPLDCYKYGPGCPQ---SGALGT--MMVSQATNHDFAEDNCLNLNV 431

Query: 331 IPSRWKCQGISLQFPNDFVV 390
              +WK    S +FPN F V
Sbjct: 432 FAPKWK----SAEFPNGFPV 447


>AC006621-2|AAK68262.2|  544|Caenorhabditis elegans Hypothetical
           protein C52A10.2 protein.
          Length = 544

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 23/76 (30%), Positives = 29/76 (38%)
 Frame = +1

Query: 163 FMSSVSCEVWMLVVERLEAIGSTPTCPALHGSPAISS*QKKVYQVEVYCFCLNLQAIPSR 342
           F  SV  E W    + L+     P CP      A+   Q   +       CLNL     +
Sbjct: 54  FKKSVEAEKW---TQPLDCYKYGPGCPQSAALGALMVSQATNHDF-AEDNCLNLNVFAPK 109

Query: 343 WKCQGISLQFPNDFVV 390
           WK    S +FPN F V
Sbjct: 110 WK----SAEFPNGFPV 121


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,534,707
Number of Sequences: 27780
Number of extensions: 228393
Number of successful extensions: 602
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)