Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0411
         (534 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g59550.1 68416.m06646 cohesion family protein SYN3 (SYN3) nea...    29   1.9  
At2g24590.1 68415.m02936 splicing factor, putative similar to to...    27   5.9  
At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family...    27   5.9  
At1g56140.1 68414.m06446 leucine-rich repeat family protein / pr...    27   7.9  

>At3g59550.1 68416.m06646 cohesion family protein SYN3 (SYN3) nearly
           identical to cohesion family protein SYN3 [Arabidopsis
           thaliana] GI:12006362; supporting cDNA
           gi|12006361|gb|AF281155.1|AF281155
          Length = 693

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 227 EPIASNRSTTSIQTSHETELMKRQRGESEAFSAGHISPVTLT 102
           EP++ +     ++T+HET      R  + AF  G  SP  +T
Sbjct: 176 EPVSRHTGEIDVETAHETGPDNEPRDSNIAFDTGTYSPRNVT 217


>At2g24590.1 68415.m02936 splicing factor, putative similar to to
           RSZp22 protein [Arabidopsis thaliana]
           gi|2582645|emb|CAA05352
          Length = 196

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 271 RKSPDFRGGRGMSESNRLPPIAQQPASKPRMRQSS 167
           RKSP + G R  S   R PP  ++ +  PR R  S
Sbjct: 134 RKSPTYGGRRSYSPRARSPPPPRRRSPSPRGRNYS 168


>At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 589

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 227 RLRHAPPSTEVRRFPPDKKKSIRLKSTVSVSTFK 328
           R R    S E+  FP   + ++R +STVSV   K
Sbjct: 506 RAREGRSSDEIEHFPVPSRVTVRRRSTVSVIEHK 539


>At1g56140.1 68414.m06446 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 1032

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 127 PALNASLSPLCLFMSSVSCEVWMLVVERLEAIGSTP 234
           PA N  +   C F +S  C +  + V  +E +GS P
Sbjct: 80  PAYNPLIKCDCSFENSTICRITNIKVYAMEVVGSIP 115


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,863,644
Number of Sequences: 28952
Number of extensions: 216025
Number of successful extensions: 546
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)