Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0410
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch... 276 2e-75
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 31 0.12
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p... 27 2.6
SPAC1039.06 |||alanine racemase |Schizosaccharomyces pombe|chr 1... 26 4.5
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 26 4.5
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 26 4.5
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 26 6.0
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb... 26 6.0
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 26 6.0
SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase |... 26 6.0
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 7.9
SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein glycotr... 25 7.9
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 25 7.9
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 25 7.9
>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 382
Score = 276 bits (677), Expect = 2e-75
Identities = 124/194 (63%), Positives = 157/194 (80%)
Frame = +2
Query: 119 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKANV 298
FLFTSESVGEGHPDK+CDQISDAILDA L DP +KVACET +KTGMV++ GEIT+++ +
Sbjct: 5 FLFTSESVGEGHPDKICDQISDAILDACLKDDPFSKVACETASKTGMVMVFGEITTRSQI 64
Query: 299 DYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHENRNDEEVGAGDQGL 478
DYQKV+R T+K IGYDDS KGFDYKTC+V++A++QQSP+IA G+H + EE+GAGDQG+
Sbjct: 65 DYQKVIRNTIKSIGYDDSEKGFDYKTCNVLVAIEQQSPDIAQGLHYEKALEELGAGDQGI 124
Query: 479 MFGYATDETEECMPLTVVLAHKLNQKIAELXRNGEFWWARPDSKTQVTCEYVFAGGATVP 658
MFGYATDET E +PLT++LAHKLN ++ R+G W RPD+KTQVT EY GA +P
Sbjct: 125 MFGYATDETPEKLPLTILLAHKLNAAMSVARRDGSLPWLRPDTKTQVTIEYEEENGAVIP 184
Query: 659 QXVHTVXXSLQHSE 700
+ V T+ S QH++
Sbjct: 185 RRVDTIVVSAQHAD 198
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 31.5 bits (68), Expect = 0.12
Identities = 40/144 (27%), Positives = 65/144 (45%)
Frame = -2
Query: 534 STTVNGMHSSVSSVA*PNIKPWSPAPTSSSFLFSCTPAAMFGDCWSSASITLHVL*SKPL 355
S++ + SVSS + +P TSSS+L S + + SS+S TL S L
Sbjct: 179 SSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLT---SSSL 235
Query: 354 DESS*PICLTVSRTTF**STLALDVISPHKSTIPVLVMVSHATFASGS*FRCASRIASLI 175
SS P + S +T S + S S+ ++S ++ +S S +S I+S
Sbjct: 236 STSSIPSTSSSSSSTS-SSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISS-- 292
Query: 174 WSHILSG*PSPTDSDVNKNTDPSS 103
S S P+ T S ++ ++ SS
Sbjct: 293 -SSSSSSSPTSTSSTISSSSSSSS 315
>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 749
Score = 27.1 bits (57), Expect = 2.6
Identities = 20/69 (28%), Positives = 29/69 (42%)
Frame = +2
Query: 92 SYDMEDGSVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLC 271
S+D E S+F S+SV E CD+ SD L K E L+
Sbjct: 657 SFDSEADSLFEEASKSVPEDPVSVFCDEESDESLRLRAE-----KTLVENALSENFTLML 711
Query: 272 GEITSKANV 298
G+ TS+ ++
Sbjct: 712 GQSTSEESL 720
>SPAC1039.06 |||alanine racemase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 415
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = -3
Query: 152 DPRQQIPM*TKILIHLPYHNCVPLVFAYPFIFEVSG 45
DP+ +P +++L +P H+C+ A+P+ + G
Sbjct: 367 DPKATLPDASQVLCIIPNHSCITAA-AFPWYYITKG 401
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 26.2 bits (55), Expect = 4.5
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 169 RPNKRRYSRRAPESGSGRKSCM 234
+P KR+Y+R+AP S R++ +
Sbjct: 1211 QPTKRKYNRKAPTKSSTRQTTL 1232
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +2
Query: 155 PDKMCDQISDAILDA-HLNQDPDAKVACETITKTGM 259
P K ++ D ++ + H N DPDAK+A ++K M
Sbjct: 180 PPKEIEKTVDHVIQSEHCNIDPDAKMAVLRLSKGDM 215
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 25.8 bits (54), Expect = 6.0
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 9/53 (16%)
Frame = -1
Query: 601 WSCPPKFSISXELCNFLIEF---------VCKHYSQRHAFFCLICCITEHQAL 470
W C PK ++ C FL F KH ++R C C + HQ+L
Sbjct: 46 WVCDPKLQVAVRECLFLFSFQNDNEYLVWFKKHLNER-LQLCPKCIVKYHQSL 97
>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 561
Score = 25.8 bits (54), Expect = 6.0
Identities = 17/68 (25%), Positives = 34/68 (50%)
Frame = -2
Query: 573 RXSSAIF*LSLCASTTVNGMHSSVSSVA*PNIKPWSPAPTSSSFLFSCTPAAMFGDCWSS 394
+ S+A+F +S+++N MH S S A N+ + ++ P + F C S+
Sbjct: 295 KSSTALFKSKKDSSSSLNKMHKSESHSALNNLHKSESGTSLNNRRSKVGPGSCF-FCLSN 353
Query: 393 ASITLHVL 370
++ LH++
Sbjct: 354 PNVALHLI 361
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = -1
Query: 391 EHHTACLVIKAFGRIIITNMFDRFAHNFLIIHVSFGCDFATQ 266
EH+ C+ + G ++++ DR + I +S C F T+
Sbjct: 101 EHNIPCITFNSSGTLLLSGSIDRSLQIWDITSLSCLCKFYTK 142
>SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 266
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 287 KANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQ 406
+ N DY K+ E VK G D+ K C ++ L Q+
Sbjct: 106 EVNEDYAKIAYELVKLAGLDEIVTIMIGKACDSLVELQQK 145
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 175 LVAHFVWMTLANRFRCEQKY*SIFHII 95
L+ HFVW + CE+K+ S H++
Sbjct: 394 LLLHFVWKSALICVLCERKFQSWGHVV 420
>SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein
glycotransferase subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 437
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = -2
Query: 582 SPFRXSSAIF*LSLCASTTVN--GMHSSVSSVA*PNIKPWSPAPTSSSFLFS 433
+P+ + +F +S+ S+T G+ S+ + + P SP+ + S+FLF+
Sbjct: 206 NPWAAGTQLFLVSVLQSSTGERVGLSGSIDMLKDEYLSPQSPSFSKSNFLFA 257
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -3
Query: 422 QQCLVIVGLVRASHCMSCNQSLWTNHHNQYV*PFRAQLFD 303
Q +V V + + CM+ +QSL + HN ++ F+ +L D
Sbjct: 61 QYSIVFVVVFQDLKCMAYSQSLLNSAHNIFLNLFKEKLED 100
>SPAC110.02 |pds5||cohesin-associated protein
Pds5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1205
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 673 SMNXLWDCCTTSKYIFASNLCF*IWSCPP 587
S + L D TT ++IF+ NL +W P
Sbjct: 244 SRDSLSDSMTTPEFIFSHNLVLQLWKYAP 272
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,144,167
Number of Sequences: 5004
Number of extensions: 68903
Number of successful extensions: 217
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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