Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0410
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0264 + 2030080-2031270 252 2e-67
01_02_0051 - 10655867-10657057 250 6e-67
01_03_0090 - 12347165-12348349 250 1e-66
10_06_0022 - 9716537-9716649,9716709-9716826,9716958-9717076,971... 31 1.2
12_02_0655 + 21588662-21589051 30 1.5
01_06_1205 + 35406456-35408072 30 2.0
08_02_0737 - 20572068-20572290,20572785-20572841,20573482-205736... 29 2.7
03_05_0640 - 26326832-26327166,26327295-26327529,26327665-263279... 29 2.7
10_06_0023 - 9727326-9727438,9727835-9727903,9727965-9728082,972... 29 4.7
06_03_1153 - 28047125-28047751 28 6.2
04_03_0847 - 20254736-20254933,20256127-20256201,20257538-202577... 28 8.2
02_01_0375 + 2712289-2712957 28 8.2
>05_01_0264 + 2030080-2031270
Length = 396
Score = 252 bits (617), Expect = 2e-67
Identities = 120/196 (61%), Positives = 147/196 (75%), Gaps = 2/196 (1%)
Frame = +2
Query: 119 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKANV 298
FLFTSESV EGHPDK+CDQ+SDA+LDA L +DPD+KVACET TKT MV++ GEIT+KANV
Sbjct: 7 FLFTSESVNEGHPDKLCDQVSDAVLDACLAEDPDSKVACETCTKTNMVMVFGEITTKANV 66
Query: 299 DYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHEN--RNDEEVGAGDQ 472
DY+K+VRET ++IG+ + G D C V++ ++QQSP+IA GVH + + EE+GAGDQ
Sbjct: 67 DYEKIVRETCRNIGFVSADVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGAGDQ 126
Query: 473 GLMFGYATDETEECMPLTVVLAHKLNQKIAELXRNGEFWWARPDSKTQVTCEYVFAGGAT 652
G MFGYATDET E MPL+ VLA KL ++ E+ +NG W RPD KTQVT EY GA
Sbjct: 127 GHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYRNESGAR 186
Query: 653 VPQXVHTVXXSLQHSE 700
VP VHTV S QH E
Sbjct: 187 VPVRVHTVLISTQHDE 202
>01_02_0051 - 10655867-10657057
Length = 396
Score = 250 bits (613), Expect = 6e-67
Identities = 120/202 (59%), Positives = 149/202 (73%), Gaps = 2/202 (0%)
Frame = +2
Query: 101 MEDGSVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEI 280
M + FLFTSESV EGHPDK+CDQISDA+LDA L +DP++KVACET TKT MV++ GEI
Sbjct: 1 MAEVDTFLFTSESVNEGHPDKLCDQISDAVLDACLAEDPESKVACETCTKTNMVMVFGEI 60
Query: 281 TSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHEN--RNDEE 454
T+KANVDY+K+VR+T + IG+ + G D + C V++ ++QQSP+IA GVH + + EE
Sbjct: 61 TTKANVDYEKIVRDTCRGIGFVSNDVGLDAEHCKVLVNIEQQSPDIAQGVHGHFTKRPEE 120
Query: 455 VGAGDQGLMFGYATDETEECMPLTVVLAHKLNQKIAELXRNGEFWWARPDSKTQVTCEYV 634
+GAGDQG MFGYATDET E MPL+ VLA KL ++ E+ +NG W RPD KTQVT EY
Sbjct: 121 IGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGACAWLRPDGKTQVTVEYQ 180
Query: 635 FAGGATVPQXVHTVXXSLQHSE 700
GA VP VHTV S QH E
Sbjct: 181 NDNGAMVPLRVHTVLISTQHDE 202
>01_03_0090 - 12347165-12348349
Length = 394
Score = 250 bits (611), Expect = 1e-66
Identities = 119/196 (60%), Positives = 145/196 (73%), Gaps = 2/196 (1%)
Frame = +2
Query: 119 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKANV 298
FLFTSESV EGHPDK+CDQ+SDA+LDA L QDPD+KVACET TKT MV++ GEIT+KA V
Sbjct: 6 FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKATV 65
Query: 299 DYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHEN--RNDEEVGAGDQ 472
DY+K+VR+T + IG+ G D C V++ ++QQSP+IA GVH + + EE+GAGDQ
Sbjct: 66 DYEKIVRDTCRGIGFVSDDVGLDADRCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGAGDQ 125
Query: 473 GLMFGYATDETEECMPLTVVLAHKLNQKIAELXRNGEFWWARPDSKTQVTCEYVFAGGAT 652
G MFGYATDET E MPL+ VLA KL ++ E+ +NG W RPD KTQVT EY+ GA
Sbjct: 126 GHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYLNDAGAM 185
Query: 653 VPQXVHTVXXSLQHSE 700
VP VHTV S QH E
Sbjct: 186 VPVRVHTVLISTQHDE 201
>10_06_0022 -
9716537-9716649,9716709-9716826,9716958-9717076,
9717238-9717476,9717793-9717849,9717933-9718019,
9718185-9718729,9718836-9719102
Length = 514
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +2
Query: 227 VACETITKTGMVLLCGEITSKANVDYQKVVRET--VKHIGYDDSSKGFDYKTCSVM 388
+ C +I+K GM+L IT + D+ K VR+ KH GY KG +K+ + M
Sbjct: 444 LVCGSISKVGMLLF---ITLRT--DWGKEVRKPSPYKHFGYHGKRKGLQFKSSNSM 494
>12_02_0655 + 21588662-21589051
Length = 129
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +1
Query: 145 RGSSRQNVRPNKRRYSRRAPESGSGRK 225
RGS V P +RR SRR P SG R+
Sbjct: 45 RGSVAVGVAPGRRRESRRRPGSGEARR 71
>01_06_1205 + 35406456-35408072
Length = 538
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 4/32 (12%)
Frame = +3
Query: 60 NEWIRENQRXT----VMIWKMDQYFCSHRNLL 143
N+WI E +R T +MI +MD+ FCS+ N++
Sbjct: 427 NQWILEYRRATWGKAIMILEMDKRFCSNVNVI 458
>08_02_0737 -
20572068-20572290,20572785-20572841,20573482-20573672,
20574566-20574700,20575722-20575871
Length = 251
Score = 29.5 bits (63), Expect = 2.7
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = +1
Query: 31 SKFRMPETSKMNGYAKTNGTQL*YGRWISIFVHIGICWRGSSRQNVRPNKRRYSRRAPES 210
S +P T ++N +NG R + + IG GSS + P RY+R A ++
Sbjct: 132 SDLGLPMTPRINVVGASNGRPT---RTVVMTPEIGQRGSGSSSRPTGPTVNRYNRGAFQA 188
Query: 211 GSGR 222
G GR
Sbjct: 189 GRGR 192
>03_05_0640 -
26326832-26327166,26327295-26327529,26327665-26327908,
26328389-26328507,26328860-26329050,26329133-26329220,
26331653-26331715,26331816-26333944,26334084-26334186
Length = 1168
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Frame = +2
Query: 104 EDGSVFLFTSESVGEGHPDKM---CDQISDAILDAHLNQDPDAKVACETITKTGMVLLC 271
+DGS +LFTS+ E HP M D+ S+ IL E I K G L C
Sbjct: 765 QDGSEWLFTSKRTDESHPFTMHVNFDKFSEDILVGDELVIDGGMATFEVIEKVGNDLRC 823
>10_06_0023 -
9727326-9727438,9727835-9727903,9727965-9728082,
9728232-9728350,9728506-9728695
Length = 202
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +2
Query: 227 VACETITKTGMVLLCGEITSKANVDYQKVVRET--VKHIGYDDSSKGFDYKTCSVM 388
+ C +I+K GM+L IT + D+ K V++ KH GY KG +K + M
Sbjct: 109 IVCGSISKVGMLLF---IT--LHTDWGKEVQKASPCKHFGYHAERKGLQFKYSNSM 159
>06_03_1153 - 28047125-28047751
Length = 208
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +1
Query: 121 FVHIGICWRG-SSRQNVRPNKRRYSRRAPESGSGRKSCM*NHN*NRYGA 264
+++ CW+ ++ P Y R P +G GR +H+ + YGA
Sbjct: 106 YIYRSQCWKSLKKKKKPPPPLPLYRPRPPPAGDGRPDVTVHHHHHHYGA 154
>04_03_0847 -
20254736-20254933,20256127-20256201,20257538-20257717,
20257802-20257869,20258563-20259125,20259198-20259235
Length = 373
Score = 27.9 bits (59), Expect = 8.2
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -1
Query: 568 ELCNFLIEFVCKHYSQRHAFFC 503
E+ +FL+ +H +QRHAF C
Sbjct: 87 EVIDFLLALPSRHPAQRHAFLC 108
>02_01_0375 + 2712289-2712957
Length = 222
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 527 VVLAHKLNQKIAELXRNGEFWWARPDSKTQVTCEYV 634
VV +L++ + ++G WW RPDS EY+
Sbjct: 164 VVYWGRLSKALVWWKQSGNNWWPRPDSDLGEDFEYI 199
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,926,589
Number of Sequences: 37544
Number of extensions: 468479
Number of successful extensions: 1283
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1280
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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