Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0410
(700 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.) 317 6e-87
SB_11655| Best HMM Match : No HMM Matches (HMM E-Value=.) 280 7e-76
SB_47946| Best HMM Match : No HMM Matches (HMM E-Value=.) 238 4e-63
SB_46129| Best HMM Match : No HMM Matches (HMM E-Value=.) 154 8e-38
SB_53305| Best HMM Match : S-AdoMet_synt_N (HMM E-Value=0.0056) 86 3e-17
SB_16847| Best HMM Match : S-AdoMet_synt_M (HMM E-Value=0) 79 3e-15
SB_15158| Best HMM Match : Cadherin (HMM E-Value=7.5e-23) 31 0.68
SB_17763| Best HMM Match : IBN_N (HMM E-Value=3.4e-20) 31 0.90
SB_31747| Best HMM Match : Myotub-related (HMM E-Value=0) 29 2.7
SB_20311| Best HMM Match : PAN (HMM E-Value=0.00055) 29 2.7
>SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 407
Score = 317 bits (778), Expect = 6e-87
Identities = 149/209 (71%), Positives = 168/209 (80%), Gaps = 4/209 (1%)
Frame = +2
Query: 80 PTXHSYDME----DGSVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETIT 247
P Y ME + FLFTSESVGEGHPDKMCDQISDAILDAHL QDP+AKVACET+
Sbjct: 14 PPSKKYKMEPLDTQNNTFLFTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVACETVA 73
Query: 248 KTGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAG 427
KTGM+LLCGEITS A VDYQ VVR+ +K IGYDDS KGFDYKTC+V++AL+QQS +IA G
Sbjct: 74 KTGMILLCGEITSNAVVDYQSVVRQCIKDIGYDDSEKGFDYKTCNVLVALEQQSVDIAHG 133
Query: 428 VHENRNDEEVGAGDQGLMFGYATDETEECMPLTVVLAHKLNQKIAELXRNGEFWWARPDS 607
VH R +E+VGAGDQGLMFGYATDETEE MPLTVVLAHK+NQK+AE R+G WARPDS
Sbjct: 134 VHVGREEEDVGAGDQGLMFGYATDETEELMPLTVVLAHKMNQKLAEYRRDGTLPWARPDS 193
Query: 608 KTQVTCEYVFAGGATVPQXVHTVXXSLQH 694
KTQVT EY F G +P VHT+ S+QH
Sbjct: 194 KTQVTVEYKFEHGRAIPLRVHTIVISVQH 222
>SB_11655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 428
Score = 280 bits (687), Expect = 7e-76
Identities = 134/201 (66%), Positives = 151/201 (75%)
Frame = +2
Query: 95 YDMEDGSVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCG 274
Y D FLFTSESV EGH DKMCDQISDA+LDAHL QDP AKVACET TKTG+VLL G
Sbjct: 44 YSTSDCDNFLFTSESVNEGHSDKMCDQISDAVLDAHLEQDPYAKVACETATKTGLVLLFG 103
Query: 275 EITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHENRNDEE 454
EITS A VDYQ VVR T++ IGY+DSS GFDYKTCSV+LA+ +Q IA VH NR D+E
Sbjct: 104 EITSNARVDYQAVVRNTIRDIGYNDSSTGFDYKTCSVLLAIQEQVAEIAQTVHLNRRDDE 163
Query: 455 VGAGDQGLMFGYATDETEECMPLTVVLAHKLNQKIAELXRNGEFWWARPDSKTQVTCEYV 634
+GAGDQGLMFGYATDETEE MPLT VLAHKL ++AE + W PD KTQVT +Y
Sbjct: 164 IGAGDQGLMFGYATDETEELMPLTTVLAHKLCARLAECRKGKILPWLLPDGKTQVTVDYR 223
Query: 635 FAGGATVPQXVHTVXXSLQHS 697
GA +P+ VHTV S QH+
Sbjct: 224 LERGACIPERVHTVLISTQHT 244
>SB_47946| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 460
Score = 238 bits (582), Expect = 4e-63
Identities = 106/152 (69%), Positives = 128/152 (84%)
Frame = +2
Query: 239 TITKTGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNI 418
++ KTGM+++CGEITS ANVDYQKVVR+T+K IGYDDSSKGFDYKTC+V+ A++QQSP+I
Sbjct: 2 SVAKTGMIVVCGEITSLANVDYQKVVRDTIKQIGYDDSSKGFDYKTCTVLQAIEQQSPDI 61
Query: 419 AAGVHENRNDEEVGAGDQGLMFGYATDETEECMPLTVVLAHKLNQKIAELXRNGEFWWAR 598
A GVH R+DE++GAGDQGLMFGYATDET+E MPLTVVLAH LN+++A+ RNG W R
Sbjct: 62 AQGVHIGRSDEDLGAGDQGLMFGYATDETDELMPLTVVLAHGLNKRLADCRRNGSLPWVR 121
Query: 599 PDSKTQVTCEYVFAGGATVPQXVHTVXXSLQH 694
PDSKTQVT EY F GG VP VHT+ S+QH
Sbjct: 122 PDSKTQVTVEYKFQGGKAVPLRVHTIVISVQH 153
>SB_46129| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 91
Score = 154 bits (373), Expect = 8e-38
Identities = 68/82 (82%), Positives = 77/82 (93%)
Frame = +2
Query: 113 SVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKA 292
+ FLFTSESVGEGHPDKMCDQISDAILDAHL QDP+AKVACE++ KTGM+++CGEITS A
Sbjct: 9 NTFLFTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVACESVAKTGMIVVCGEITSLA 68
Query: 293 NVDYQKVVRETVKHIGYDDSSK 358
NVDYQKVVR+T+K IGYDDSSK
Sbjct: 69 NVDYQKVVRDTIKQIGYDDSSK 90
>SB_53305| Best HMM Match : S-AdoMet_synt_N (HMM E-Value=0.0056)
Length = 70
Score = 85.8 bits (203), Expect = 3e-17
Identities = 41/56 (73%), Positives = 43/56 (76%), Gaps = 4/56 (7%)
Frame = +2
Query: 80 PTXHSYDME----DGSVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVAC 235
P Y ME + FLFTSESVGEGHPDKMCDQISDAILDAHL QDP+AKVAC
Sbjct: 14 PPSKKYKMEPLDTQNNTFLFTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVAC 69
>SB_16847| Best HMM Match : S-AdoMet_synt_M (HMM E-Value=0)
Length = 192
Score = 79.0 bits (186), Expect = 3e-15
Identities = 35/61 (57%), Positives = 45/61 (73%)
Frame = +2
Query: 449 EEVGAGDQGLMFGYATDETEECMPLTVVLAHKLNQKIAELXRNGEFWWARPDSKTQVTCE 628
E+ GAGDQGLMFGYAT+ET+ MP V AH+L ++ +EL RNG W RPD+K+QVT
Sbjct: 8 EDQGAGDQGLMFGYATNETDSLMPAPVYYAHRLVERQSELRRNGTLPWLRPDAKSQVTIN 67
Query: 629 Y 631
+
Sbjct: 68 W 68
>SB_15158| Best HMM Match : Cadherin (HMM E-Value=7.5e-23)
Length = 390
Score = 31.5 bits (68), Expect = 0.68
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = +2
Query: 272 GEITSKANVDYQKVVRETV---KHIGYDDSSKGFDYK 373
GEITS N+D +K+ + K I YD G+DY+
Sbjct: 103 GEITSNVNIDREKLPGSNLLEFKAIAYDAKGAGYDYR 139
>SB_17763| Best HMM Match : IBN_N (HMM E-Value=3.4e-20)
Length = 681
Score = 31.1 bits (67), Expect = 0.90
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 494 LHNRTSSPGLLPQLPRHFCSHAPQQQCLVIVGL 396
L N T+ P + PQ P H SHA + ++I G+
Sbjct: 99 LGNETARPAIAPQEPEHLVSHANKILTVIIQGM 131
>SB_31747| Best HMM Match : Myotub-related (HMM E-Value=0)
Length = 550
Score = 29.5 bits (63), Expect = 2.7
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -2
Query: 240 VSHATFASGS*FRCASRIASLIWSHILSG 154
+S + A + FRC+ R S++W H+ +G
Sbjct: 287 ISDSDLAKVASFRCSGRFPSIVWRHMTNG 315
>SB_20311| Best HMM Match : PAN (HMM E-Value=0.00055)
Length = 443
Score = 29.5 bits (63), Expect = 2.7
Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 2/77 (2%)
Frame = +1
Query: 406 ITKHCC-WGA*EQK*RGSWGRRPGL-DVRLCNR*DRRMHAVDCSACTQTQSENCRAXAKW 579
+T++C WG+ G WG+ L D R CS C Q Q E + W
Sbjct: 259 LTRNCAKWGSNGTLPEGEWGKNALLKDGTKTETSKIRRQFQQCSVCYQIQPETTKCFIAW 318
Query: 580 RILVGKTRFKNTGYLRI 630
+ + Y+RI
Sbjct: 319 TKSLRTILHRRKKYIRI 335
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,464,303
Number of Sequences: 59808
Number of extensions: 565386
Number of successful extensions: 1424
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1423
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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