Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0410
(700 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g17390.1 68416.m02222 S-adenosylmethionine synthetase, putati... 256 1e-68
At4g01850.1 68417.m00242 S-adenosylmethionine synthetase 2 (SAM2... 248 3e-66
At1g02500.2 68414.m00201 S-adenosylmethionine synthetase 1 (SAM1... 248 4e-66
At1g02500.1 68414.m00200 S-adenosylmethionine synthetase 1 (SAM1... 248 4e-66
At2g36880.1 68415.m04521 S-adenosylmethionine synthetase, putati... 246 8e-66
At2g03270.1 68415.m00280 DNA-binding protein, putative similar t... 28 5.2
At3g43300.1 68416.m04570 guanine nucleotide exchange family prot... 28 6.8
At1g54960.1 68414.m06277 NPK1-related protein kinase, putative (... 28 6.8
At2g45000.1 68415.m05603 expressed protein contains Pfam profile... 27 9.0
At1g05055.1 68414.m00506 basic transcription factor 2, 44kD subu... 27 9.0
>At3g17390.1 68416.m02222 S-adenosylmethionine synthetase, putative
similar to S-adenosylmethionine synthetase 2 (Methionine
adenosyltransferase 2, AdoMet synthetase 2)
[Catharanthus roseus] SWISS-PROT:Q96552
Length = 393
Score = 256 bits (626), Expect = 1e-68
Identities = 123/196 (62%), Positives = 147/196 (75%), Gaps = 2/196 (1%)
Frame = +2
Query: 119 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKANV 298
FLFTSESV EGHPDK+CDQISDAILDA L QDP++KVACET TKT MV++ GEIT+KANV
Sbjct: 4 FLFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETCTKTNMVMVFGEITTKANV 63
Query: 299 DYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHEN--RNDEEVGAGDQ 472
DY+++VR+T + IG+ + G D C V++ ++QQSP+IA GVH + + EEVGAGDQ
Sbjct: 64 DYEQIVRKTCREIGFVSADVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKKPEEVGAGDQ 123
Query: 473 GLMFGYATDETEECMPLTVVLAHKLNQKIAELXRNGEFWWARPDSKTQVTCEYVFAGGAT 652
G MFGYATDET E MPLT VLA KL K+ E+ +NG W RPD KTQVT EY+ GA
Sbjct: 124 GHMFGYATDETPELMPLTHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTIEYINESGAM 183
Query: 653 VPQXVHTVXXSLQHSE 700
VP VHTV S QH E
Sbjct: 184 VPVRVHTVLISTQHDE 199
>At4g01850.1 68417.m00242 S-adenosylmethionine synthetase 2 (SAM2)
identical to S-adenosylmethionine synthetase 2
(Methionine adenosyltransferase 2, AdoMet synthetase 2)
[Arabidopsis thaliana] SWISS-PROT:P17562
Length = 393
Score = 248 bits (607), Expect = 3e-66
Identities = 117/196 (59%), Positives = 144/196 (73%), Gaps = 2/196 (1%)
Frame = +2
Query: 119 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKANV 298
FLFTSESV EGHPDK+CDQISDA+LDA L QDPD+KVACET TKT MV++ GEIT+KA +
Sbjct: 4 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTKATI 63
Query: 299 DYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHEN--RNDEEVGAGDQ 472
DY+K+VR+T + IG+ G D C V++ ++QQSP+IA GVH + + E++GAGDQ
Sbjct: 64 DYEKIVRDTCRSIGFISDDVGLDADKCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQ 123
Query: 473 GLMFGYATDETEECMPLTVVLAHKLNQKIAELXRNGEFWWARPDSKTQVTCEYVFAGGAT 652
G MFGYATDET E MPL+ VLA K+ ++ E+ +NG W RPD KTQVT EY GA
Sbjct: 124 GHMFGYATDETPELMPLSHVLATKIGARLTEVRKNGTCRWLRPDGKTQVTVEYYNDNGAM 183
Query: 653 VPQXVHTVXXSLQHSE 700
VP VHTV S QH E
Sbjct: 184 VPVRVHTVLISTQHDE 199
>At1g02500.2 68414.m00201 S-adenosylmethionine synthetase 1 (SAM1)
identical to S-adenosylmethionine synthetase 1
(Methionine adenosyltransferase 1, AdoMet synthetase 1)
[Arabidopsis thaliana] SWISS-PROT:P23686
Length = 393
Score = 248 bits (606), Expect = 4e-66
Identities = 120/196 (61%), Positives = 144/196 (73%), Gaps = 2/196 (1%)
Frame = +2
Query: 119 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKANV 298
FLFTSESV EGHPDK+CDQISDA+LDA L QDPD+KVACET TKT MV++ GEIT+KA V
Sbjct: 4 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTKATV 63
Query: 299 DYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHEN--RNDEEVGAGDQ 472
DY+K+VR+T + IG+ G D C V++ ++QQSP+IA GVH + + EE+GAGDQ
Sbjct: 64 DYEKIVRDTCRAIGFVSDDVGLDADKCKVLVNIEQQSPDIAQGVHGHFTKCPEEIGAGDQ 123
Query: 473 GLMFGYATDETEECMPLTVVLAHKLNQKIAELXRNGEFWWARPDSKTQVTCEYVFAGGAT 652
G MFGYATDET E MPL+ VLA KL ++ E+ +NG W RPD KTQVT EY GA
Sbjct: 124 GHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYYNDKGAM 183
Query: 653 VPQXVHTVXXSLQHSE 700
VP VHTV S QH E
Sbjct: 184 VPIRVHTVLISTQHDE 199
>At1g02500.1 68414.m00200 S-adenosylmethionine synthetase 1 (SAM1)
identical to S-adenosylmethionine synthetase 1
(Methionine adenosyltransferase 1, AdoMet synthetase 1)
[Arabidopsis thaliana] SWISS-PROT:P23686
Length = 393
Score = 248 bits (606), Expect = 4e-66
Identities = 120/196 (61%), Positives = 144/196 (73%), Gaps = 2/196 (1%)
Frame = +2
Query: 119 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKANV 298
FLFTSESV EGHPDK+CDQISDA+LDA L QDPD+KVACET TKT MV++ GEIT+KA V
Sbjct: 4 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTKATV 63
Query: 299 DYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHEN--RNDEEVGAGDQ 472
DY+K+VR+T + IG+ G D C V++ ++QQSP+IA GVH + + EE+GAGDQ
Sbjct: 64 DYEKIVRDTCRAIGFVSDDVGLDADKCKVLVNIEQQSPDIAQGVHGHFTKCPEEIGAGDQ 123
Query: 473 GLMFGYATDETEECMPLTVVLAHKLNQKIAELXRNGEFWWARPDSKTQVTCEYVFAGGAT 652
G MFGYATDET E MPL+ VLA KL ++ E+ +NG W RPD KTQVT EY GA
Sbjct: 124 GHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYYNDKGAM 183
Query: 653 VPQXVHTVXXSLQHSE 700
VP VHTV S QH E
Sbjct: 184 VPIRVHTVLISTQHDE 199
>At2g36880.1 68415.m04521 S-adenosylmethionine synthetase, putative
similar to S-adenosylmethionine synthetase 3 (Methionine
adenosyltransferase 3, AdoMet synthetase 3)
[Lycopersicon esculentum] SWISS-PROT:P43282
Length = 390
Score = 246 bits (603), Expect = 8e-66
Identities = 119/196 (60%), Positives = 144/196 (73%), Gaps = 2/196 (1%)
Frame = +2
Query: 119 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKANV 298
FLFTSESV EGHPDK+CDQISDAILDA L QDP++KVACET TKT MV++ GEIT+ A V
Sbjct: 4 FLFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETCTKTNMVMVFGEITTAAKV 63
Query: 299 DYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHEN--RNDEEVGAGDQ 472
DY+K+VR T + IG+ + G D C+V++ ++QQSP+IA GVH + + E++GAGDQ
Sbjct: 64 DYEKIVRSTCREIGFISADVGLDADKCNVLVNIEQQSPDIAQGVHGHLTKKPEDIGAGDQ 123
Query: 473 GLMFGYATDETEECMPLTVVLAHKLNQKIAELXRNGEFWWARPDSKTQVTCEYVFAGGAT 652
G MFGYATDET E MPLT VLA KL K+ E+ +N W RPD KTQVT EY GGA
Sbjct: 124 GHMFGYATDETPELMPLTHVLATKLGAKLTEVRKNKTCPWLRPDGKTQVTVEYKNDGGAM 183
Query: 653 VPQXVHTVXXSLQHSE 700
+P VHTV S QH E
Sbjct: 184 IPIRVHTVLISTQHDE 199
>At2g03270.1 68415.m00280 DNA-binding protein, putative similar to
Swiss-Prot:Q60560 DNA-binding protein SMUBP-2
(Immunoglobulin MU binding protein 2) (SMUBP-2) (Insulin
II gene enhancer-binding protein)(RIPE3B-binding complex
3B2 P110 subunit) (RIP-1)[Mesocricetus auratus];
identical to putative helicase (atpc-2 gene) cDNA
NCBI_gi:11191230
Length = 639
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/70 (18%), Positives = 40/70 (57%)
Frame = +2
Query: 149 GHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKANVDYQKVVRETV 328
GHP ++ Q+ D+ LDA + + ++ +A + + M L G++ + + ++++++ +
Sbjct: 264 GHPARLLPQVLDSALDAQVLKGDNSGLAND--IRKEMKALNGKLLKAKDKNTRRLIQKEL 321
Query: 329 KHIGYDDSSK 358
+ +G ++ +
Sbjct: 322 RTLGKEERKR 331
>At3g43300.1 68416.m04570 guanine nucleotide exchange family protein
similar to SP|Q9Y6D5 Brefeldin A-inhibited guanine
nucleotide-exchange protein 2 {Homo sapiens}; contains
Pfam profile PF01369: Sec7 domain
Length = 1756
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +2
Query: 212 DPDAKVACETITKTGMVLLCGEITSKANVDYQKVVRE---TVKHIGYDDSSKGFDYKTCS 382
DP+ +A +T + G L C K+ VD++K+ RE + ++ D +S G +T S
Sbjct: 523 DPNPAMASQTASVKGSSLQCLVNVLKSLVDWEKIRREAENSTRNANEDSASTGEPIETKS 582
>At1g54960.1 68414.m06277 NPK1-related protein kinase, putative
(ANP2) similar to protein kinase [Nicotiana tabacum]
gi|456309|dbj|BAA05648; identical to cDNA NPK1-related
protein kinase 2, partial cds GI:2342424
Length = 596
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +2
Query: 203 LNQDPDAKVACETITKTGMVLLCGEITSKANVDYQKVVRETVKHIGYDD 349
L+ + DAK +C+T+++ +L C + N + + V V H Y +
Sbjct: 431 LDNNTDAKKSCDTMSEISDILKCKFDENSGNGETETKVSMEVDHPSYSE 479
>At2g45000.1 68415.m05603 expressed protein contains Pfam profile:
PF05064 Nsp1-like C-terminal region
Length = 739
Score = 27.5 bits (58), Expect = 9.0
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = -2
Query: 567 SSAIF*LSLCASTTVNGMHSSVSSV--A*PNIKPWSPAPTSSSFLFSCTPAAMFGDCWSS 394
+S++F S A+T+ + + + SS A P+ S AP SSS +F T ++ SS
Sbjct: 203 NSSLFGASSSAATSTSPLFGAPSSATGATPSFSVASSAPGSSSSIFGATGSSPSFSVASS 262
Query: 393 AS 388
AS
Sbjct: 263 AS 264
>At1g05055.1 68414.m00506 basic transcription factor 2, 44kD
subunit-related contains weak similarity to
Swiss-Prot:Q13888 TFIIH basal transcription factor
complex p44 subunit (Basic transcription factor 2 44 kDa
subunit, BTF2-p44, General transcription factor IIH
polypeptide 2) [Homo sapiens]
Length = 421
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 538 CKHYSQRHAFFCLICCITEHQALVSCP 458
CKHY FCL C I H++L +CP
Sbjct: 385 CKHY------FCLDCDIYIHESLHNCP 405
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,783,298
Number of Sequences: 28952
Number of extensions: 378055
Number of successful extensions: 1008
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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