Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0409
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    28   1.5  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   2.0  
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    26   4.5  
SPAC15A10.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   7.9  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    25   7.9  

>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 7/125 (5%)
 Frame = +3

Query: 219 EYKLEGDVVKVKNVHIIDGVKKYIE---GTAKL-TDDANKAAKLTVTFKFGE--ISRDGS 380
           EY++EG  +++ N  IID +    E   G  KL      KA + T+T    E   + +  
Sbjct: 600 EYRMEGQFLEIYNETIIDLLASGNEEEKGKKKLEIYHDTKAGRTTITNITSEPLDTPEQV 659

Query: 381 VQILATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLEGDAKTAVDNFIK-EHSKEID 557
             +L     N ++A     +   +SH VF+  L+ +    G+   +  N I    S+ + 
Sbjct: 660 TWLLDQASKNRSVAATNANEHSSRSHSVFMLHLNGSNSTTGETCRSTLNLIDLAGSERLS 719

Query: 558 SSKLV 572
           SS+ V
Sbjct: 720 SSQSV 724


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +3

Query: 492  KLEGDAKTAVDNFIKEHSKEIDSSKLVHTDFSEE 593
            K+EGDAKT  DN +++  K  D  K    D++EE
Sbjct: 1306 KIEGDAKTGDDNEMEDLDKMEDLEK---PDYAEE 1336


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = -1

Query: 649 SLNVFPC----SVITLELVNLQASSEKSVCTSFEESISLECSLMKLS 521
           S+N + C    ++ TL  VN   +S + + T   ESI   CSL++++
Sbjct: 129 SMNPYSCDSNENLSTLSSVNQNFNSRQLLATIVPESIQNGCSLLRIT 175


>SPAC15A10.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 190

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -1

Query: 643 NVFPCSVITLELV--NLQASSEKSVCTSFEESISLE 542
           N F  +++++ +V   ++    KS+CT+F  SIS E
Sbjct: 20  NFFLTNILSMSVVFRTVEDPELKSICTTFTSSISAE 55


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +3

Query: 129 NFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKY 287
           N N    +GI  E+SK+ +   KN + SS + K     V+ +    I+G+K +
Sbjct: 376 NINEINEEGIMTEVSKYASLVNKNYEISSGKLKERQVAVRAR----IEGIKAH 424


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,607,422
Number of Sequences: 5004
Number of extensions: 50637
Number of successful extensions: 175
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)