Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0409
(700 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58070.1 68418.m07267 lipocalin, putative similar to temperat... 57 1e-08
At5g37190.1 68418.m04465 COP1-interacting protein 4 (CIP4) simil... 31 0.73
At5g22450.1 68418.m02618 expressed protein 30 1.3
At4g00930.1 68417.m00126 COP1-interacting protein 4.1 (CIP4.1) i... 30 1.3
At1g08550.1 68414.m00948 violaxanthin de-epoxidase precursor, pu... 29 2.2
At5g60040.1 68418.m07529 DNA-directed RNA polymerase, putative s... 29 3.9
At5g20170.1 68418.m02402 expressed protein 29 3.9
At2g27110.2 68415.m03258 far-red impaired responsive protein, pu... 29 3.9
At2g27110.1 68415.m03257 far-red impaired responsive protein, pu... 29 3.9
At5g36740.1 68418.m04402 PHD finger family protein 28 5.2
At5g36670.1 68418.m04388 PHD finger family protein 28 5.2
At5g17000.1 68418.m01991 NADP-dependent oxidoreductase, putative... 28 5.2
At3g47460.1 68416.m05161 SMC2-like condensin, putative similar t... 28 5.2
At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing ... 27 9.0
At2g29070.2 68415.m03533 ubiquitin fusion degradation UFD1 famil... 27 9.0
At2g29070.1 68415.m03534 ubiquitin fusion degradation UFD1 famil... 27 9.0
>At5g58070.1 68418.m07267 lipocalin, putative similar to temperature
stress-induced lipocalin [Triticum aestivum] GI:18650668
Length = 186
Score = 57.2 bits (132), Expect = 1e-08
Identities = 49/163 (30%), Positives = 78/163 (47%), Gaps = 3/163 (1%)
Frame = +3
Query: 111 ELKPVNNFNLTAYQGIWYEISKFPNESE-KNGKCSSAEYKLEGD-VVKVKNVHIIDGVKK 284
E++ V N+ Y G WYEI+ FP+ + KNG + A Y L D + V N +G +
Sbjct: 6 EMEVVKGLNVERYMGRWYEIASFPSRFQPKNGVDTRATYTLNPDGTIHVLNETWSNGKRG 65
Query: 285 YIEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQILATDYNNYAIAYNCKYDDKKKSHQV 464
+IEG+A D + AKL V F + + DY I + ++ + +
Sbjct: 66 FIEGSAYKADPKSDEAKLKVKFYVPPFL---PIIPVTGDYWVLYIDPDYQHALIGQPSRS 122
Query: 465 FVWILSRNKKLEGDA-KTAVDNFIKEHSKEIDSSKLVHTDFSE 590
++WILSR ++E + K V+ ++E D SKL T S+
Sbjct: 123 YLWILSRTAQMEEETYKQLVEKAVEE---GYDISKLHKTPQSD 162
>At5g37190.1 68418.m04465 COP1-interacting protein 4 (CIP4) similar
to COP1-interacting protein 4 (CIP4) [Arabidopsis
thaliana] GI:13160646; supporting cDNA
gi|13160645|dbj|AB036832.1|;
Length = 876
Score = 31.1 bits (67), Expect = 0.73
Identities = 20/75 (26%), Positives = 36/75 (48%)
Frame = +3
Query: 192 EKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTAKLTDDANKAAKLTVTFKFGEISR 371
EK+GK SS K + + V+ ++D +++ E L K++K T K ++
Sbjct: 515 EKSGKKSSKRSKKKDSLNIVEEAQVVDSLQQKKEAEENLEKSGKKSSKKTK--KKDSLNI 572
Query: 372 DGSVQILATDYNNYA 416
Q+L+ + NN A
Sbjct: 573 VEEAQVLSVEVNNVA 587
>At5g22450.1 68418.m02618 expressed protein
Length = 1180
Score = 30.3 bits (65), Expect = 1.3
Identities = 37/183 (20%), Positives = 73/183 (39%), Gaps = 3/183 (1%)
Frame = +3
Query: 129 NFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTAK- 305
NF + G+ I++ E + C A + E + V + + ++ +G K
Sbjct: 285 NFRSKSSPGV-SGINRLDTSFEPDSPCMGALSRNELETVSIARDRSVLAEQRLAKGNNKR 343
Query: 306 -LTDDANKAAKLTVTFKFGEISRDGSVQILATDYNNYAIAYNCKYDDKKKSHQVFVWILS 482
L DD+ + T K G++SR + ++ + +H + W+
Sbjct: 344 NLLDDSPTNSS-TAILK-GKVSRAPRTAAIMGVESSAKVDSPSGVLQGSSAHAMAQWVGQ 401
Query: 483 RNKKLEGDAKTAVDNFIKEHSK-EIDSSKLVHTDFSEEACKFTSSSVITEHGKTLRLKRY 659
R K +T V + + +HS+ +I +DFS A T+ + L++KR
Sbjct: 402 RPHKNSRTRRTNVVSPVIKHSESKISGQGFATSDFSPRASPGTTGPLSVVDSSPLKMKRE 461
Query: 660 LKH 668
L++
Sbjct: 462 LRN 464
>At4g00930.1 68417.m00126 COP1-interacting protein 4.1 (CIP4.1)
identical to cDNA CIP4.1 mRNA for COP1-interacting
protein 4.1, GI:13160649
Length = 976
Score = 30.3 bits (65), Expect = 1.3
Identities = 25/130 (19%), Positives = 57/130 (43%)
Frame = +3
Query: 192 EKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTAKLTDDANKAAKLTVTFKFGEISR 371
EK+GK SS K + + V+ ++D +++ E L K++K + K ++
Sbjct: 665 EKSGKKSSKRSKKKDSLNIVEEAQVVDSLQQKKEAEENLEKSGKKSSKRSK--KKDSLNI 722
Query: 372 DGSVQILATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLEGDAKTAVDNFIKEHSKE 551
Q+L+ + NN A ++ K + +F + K ++ + +++++
Sbjct: 723 VEEAQVLSVEVNNVAQEEASPINNPKDTDALFTPAKKNTESNASPLKKIIE--VTDNTED 780
Query: 552 IDSSKLVHTD 581
I+ S V +
Sbjct: 781 INRSMQVQKE 790
>At1g08550.1 68414.m00948 violaxanthin de-epoxidase precursor,
putative (AVDE1) similar to EST gb|N37612
Length = 462
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +3
Query: 123 VNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLEGDVVKVKNV 260
V NFN++ + G WY I+ N + C E+ EGD V N+
Sbjct: 204 VQNFNISDFNGKWY-ITSGLNPTFDAFDCQLHEFHTEGDNKLVGNI 248
>At5g60040.1 68418.m07529 DNA-directed RNA polymerase, putative
similar to SP|P04051 DNA-directed RNA polymerase III
largest subunit (EC 2.7.7.6) {Saccharomyces cerevisiae};
contains InterPro accession IPR000722: RNA polymerase,
alpha subunit
Length = 1328
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +3
Query: 285 YIEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQILATDYNNYAIA 422
Y + ++ KA F G ++DG IL DYN++A A
Sbjct: 609 YFRNSELISGQLGKATLALDIFPLGNGNKDGLYSILLRDYNSHAAA 654
>At5g20170.1 68418.m02402 expressed protein
Length = 654
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -1
Query: 655 LFSLNVFPCSVITLELVNLQASSEKSVCTSFEES 554
LFS+N + C V L ++ LQ + + VC EE+
Sbjct: 529 LFSINKYECDVADLPVMILQQVASQIVCWLLEEA 562
>At2g27110.2 68415.m03258 far-red impaired responsive protein,
putative similar to far-red impaired response protein
FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
Length = 851
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 492 KLEGDAKTAVDNFIKEHSKEIDSSKLVH 575
+L+G K V F+KEH+ + SS ++H
Sbjct: 115 ELQGHEKWVVTKFVKEHTHGLASSNMLH 142
>At2g27110.1 68415.m03257 far-red impaired responsive protein,
putative similar to far-red impaired response protein
FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
Length = 851
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 492 KLEGDAKTAVDNFIKEHSKEIDSSKLVH 575
+L+G K V F+KEH+ + SS ++H
Sbjct: 115 ELQGHEKWVVTKFVKEHTHGLASSNMLH 142
>At5g36740.1 68418.m04402 PHD finger family protein
Length = 1179
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 207 CSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTAKLTD 314
C Y EGD + N+ ++DG + E T KLTD
Sbjct: 1020 CLKLTYVEEGDNDRESNLKLLDGSVEEKEDTKKLTD 1055
>At5g36670.1 68418.m04388 PHD finger family protein
Length = 1193
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 207 CSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTAKLTD 314
C Y EGD + N+ ++DG + E T KLTD
Sbjct: 1034 CLKLTYVEEGDNDRESNLKLLDGSVEEKEDTKKLTD 1069
>At5g17000.1 68418.m01991 NADP-dependent oxidoreductase, putative
strong similarity to probable NADP-dependent
oxidoreductase (zeta-crystallin homolog) P1
[SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430],
Arabidopsis thaliana
Length = 345
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Frame = +3
Query: 168 ISKFPNESEKNGKCSSAEYKLEG--DVVKVKNVHI 266
+S FP ES+ + K ++ E+KL G + V VKN+++
Sbjct: 14 VSGFPKESDFDFKTTTVEFKLPGGSNSVLVKNLYL 48
>At3g47460.1 68416.m05161 SMC2-like condensin, putative similar to
SMC2-like condensin (TITAN3) [Arabidopsis thaliana]
GI:14279543; contains Pfam profiles PF02483: SMC family
C-terminal domain, PF02463: RecF/RecN/SMC N terminal
domain
Length = 1171
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +3
Query: 501 GDAKTAVDNFIKEHSKEIDSSKLVHTDFSEEACKFTSSSVITEHGKTLR 647
G+ + VD K+H + + KL+H E C S I E K L+
Sbjct: 850 GNQRAKVDAIQKDHDQSLSELKLIHAKMKE--CDTQISGSIAEQEKCLQ 896
>At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 979
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 480 SRNKKLEGDAKTAVDNFIKEHSKE 551
+R +K EG+ TA I+EHSK+
Sbjct: 548 NRKRKAEGECSTAETESIEEHSKD 571
>At2g29070.2 68415.m03533 ubiquitin fusion degradation UFD1 family
protein similar to SP|P70362 Ubiquitin fusion
degradation protein 1 homolog (UB fusion protein 1) {Mus
musculus}; contains Pfam profile PF03152: Ubiquitin
fusion degradation protein UFD1
Length = 312
Score = 27.5 bits (58), Expect = 9.0
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +3
Query: 231 EGDVVKVKNVHIIDGVK-KYIEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQILATDYN 407
EGDV++VKN+ ++ G K T D +N A L T + G + YN
Sbjct: 91 EGDVMQVKNISLVKGTYIKLQPHTQDFLDISNPKAILETTLRSYSCLTTGDT--IMVPYN 148
Query: 408 N 410
N
Sbjct: 149 N 149
>At2g29070.1 68415.m03534 ubiquitin fusion degradation UFD1 family
protein similar to SP|P70362 Ubiquitin fusion
degradation protein 1 homolog (UB fusion protein 1) {Mus
musculus}; contains Pfam profile PF03152: Ubiquitin
fusion degradation protein UFD1
Length = 280
Score = 27.5 bits (58), Expect = 9.0
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +3
Query: 231 EGDVVKVKNVHIIDGVK-KYIEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQILATDYN 407
EGDV++VKN+ ++ G K T D +N A L T + G + YN
Sbjct: 59 EGDVMQVKNISLVKGTYIKLQPHTQDFLDISNPKAILETTLRSYSCLTTGDT--IMVPYN 116
Query: 408 N 410
N
Sbjct: 117 N 117
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,593,664
Number of Sequences: 28952
Number of extensions: 263389
Number of successful extensions: 871
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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