Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0406
         (750 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     25   0.85 
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    25   0.85 
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           25   0.85 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   2.0  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    22   6.0  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   8.0  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    21   8.0  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 364 SNGDQPPEFIPVRNG*SHSSNQQLELEPSMECSKYFWR 477
           SNG   P   P R   +++ +Q LELE     ++Y  R
Sbjct: 223 SNGTFAPGMEPKRQRTAYTRHQILELEKEFHYNRYLTR 260


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 364 SNGDQPPEFIPVRNG*SHSSNQQLELEPSMECSKYFWR 477
           SNG   P   P R   +++ +Q LELE     ++Y  R
Sbjct: 223 SNGTFAPGMEPKRQRTAYTRHQILELEKEFHYNRYLTR 260


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 364 SNGDQPPEFIPVRNG*SHSSNQQLELEPSMECSKYFWR 477
           SNG   P   P R   +++ +Q LELE     ++Y  R
Sbjct: 223 SNGTFAPGMEPKRQRTAYTRHQILELEKEFHYNRYLTR 260


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 110  PADTIAAPSVEETQNKASFETIESGLKSLETNFN 211
            P+DT    + ++T+  A+ ETI  GLK   TN++
Sbjct: 1142 PSDTWFDENTKDTKITAASETILHGLKKY-TNYS 1174


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
 Frame = +2

Query: 344 GPTNPLIQMVTNLQNSFLSGMANL-TQAINNWNSNQAWSVPNIFGG---ASTAAPQSDVQ 511
           GP NPLI ++    NS+      + T     W   +  S P+  G     +T  P   V 
Sbjct: 381 GPKNPLINILYANMNSYSVPEPTISTTPRPEW--ARPPSTPSADGSKPVQTTPKPGQWVP 438

Query: 512 XDATTTTQR 538
             +T+TTQR
Sbjct: 439 EKSTSTTQR 447


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = +2

Query: 464  NIFGGASTAAPQSDVQXDATTTTQRPAPWQNLP 562
            N+    +TA P       +TTT+  P    N P
Sbjct: 1335 NVVDIVTTAKPAQSTTSVSTTTSWNPGSTTNYP 1367


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = +1

Query: 352 KSFNSNGDQPPEFIPVRNG*SHSSNQQLELEPSMECSKYFWR 477
           K       Q    +P R   ++++ Q LELE     +KY  R
Sbjct: 121 KKTTRKSSQQENGLPRRLRTAYTNTQLLELEKEFHFNKYLCR 162


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,418
Number of Sequences: 336
Number of extensions: 3217
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)