Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0406
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces...    27   3.8  
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce...    27   3.8  
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc...    26   6.6  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    26   6.6  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    26   6.6  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    26   6.6  

>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 491

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 119 TIAAPSVEETQNKASFETIESGLKSLETNFNSGLNQLSE 235
           TI +PS++E+  ++  +        +ETN NS L + SE
Sbjct: 168 TIVSPSLKESDFESEEKATNDNNGLIETNHNSKLEESSE 206


>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 476 GASTAAPQSDVQXDATTTTQRPAP 547
           G S AA  S+++ DAT    RP P
Sbjct: 243 GISGAASDSEIEEDATVEIDRPVP 266


>SPAC1F8.03c |str3||siderophore-iron transporter Str3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 481 SSAKNIWNTPCLVRVPVVDCLSEISHSGQE 392
           S AKN W  P ++ + VV  +  I++SG E
Sbjct: 324 SYAKNGWKNPSMIAMMVVGGVILIAYSGYE 353


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/56 (25%), Positives = 24/56 (42%)
 Frame = +2

Query: 107 KPADTIAAPSVEETQNKASFETIESGLKSLETNFNSGLNQLSEGIQIVATFKADGE 274
           KP +  + PS+  +  K    T+ +  K + T   S  N       I++TF +  E
Sbjct: 398 KPINPTSFPSLTSSTKKIPSTTLPTSSKMITTTTPSVSNNTQSSFLIISTFTSSYE 453


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +2

Query: 11  TEQINELQASLQHFQENFGAQIQKLNETL 97
           + ++N+LQ   ++ +  F  QI+KLN  +
Sbjct: 111 SHEVNDLQTDRENLKHQFEDQIEKLNSEI 139


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 488 AAPQSDVQXDATTTTQRPAPWQNLP 562
           A+ +  V   + TT  +P+PW++LP
Sbjct: 607 ASKEIPVTSGSQTTAPKPSPWKSLP 631


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,819,018
Number of Sequences: 5004
Number of extensions: 53550
Number of successful extensions: 155
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)