Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0406
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0324 + 16747117-16747330,16747432-16747559,16747675-167477...    32   0.42 
02_01_0620 + 4650572-4650671,4650755-4650891,4651012-4651205,465...    29   3.0  
01_07_0290 - 42542201-42542359,42542443-42542551,42542729-425435...    29   5.2  
06_03_0923 - 25972063-25972840,25973549-25973620,25973711-259737...    28   9.1  

>10_08_0324 +
           16747117-16747330,16747432-16747559,16747675-16747744,
           16747832-16747988,16748089-16748701,16749132-16749653,
           16749686-16750279,16750359-16750709,16750808-16751395
          Length = 1078

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -1

Query: 660 PEKRPEGACDC*PLWFC 610
           PEKRP+  CDC P W C
Sbjct: 602 PEKRPKMTCDCWPSWCC 618


>02_01_0620 +
           4650572-4650671,4650755-4650891,4651012-4651205,
           4651287-4651571,4652111-4652169,4652469-4652540,
           4652817-4652925,4653239-4653980
          Length = 565

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -3

Query: 340 GACYCRSCC-ALSRGGTGTFSCSLSV 266
           G C+C  CC   SRGG G++SC+  V
Sbjct: 107 GCCFC--CCPGSSRGGGGSYSCTALV 130


>01_07_0290 -
           42542201-42542359,42542443-42542551,42542729-42543516,
           42543601-42543744,42543840-42544013,42544056-42544369,
           42544467-42544636,42544916-42545043,42545125-42545185,
           42545473-42545642,42545783-42547387,42547479-42547631,
           42547747-42547905,42548066-42548236,42548357-42548404,
           42548509-42548624,42548885-42549029,42549122-42549220
          Length = 1570

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 451 CLVRVPVVDCLSEISHSGQE*ILEVGHHL 365
           CL R+ + DC +EIS   Q+   +  HHL
Sbjct: 873 CLRRIKLEDCTTEISIKYQQQATQAAHHL 901


>06_03_0923 -
           25972063-25972840,25973549-25973620,25973711-25973747,
           25973852-25973910,25974011-25974295,25974653-25974954,
           25974986-25975116,25975209-25975296
          Length = 583

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 346 AIGACYCRSCCALSRGGTGTFSCSLS 269
           A  AC CR CC+ + GG G    S S
Sbjct: 130 AFVACCCRCCCSGAGGGNGNGGYSYS 155


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,654,130
Number of Sequences: 37544
Number of extensions: 361648
Number of successful extensions: 946
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)