Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0406
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44379| Best HMM Match : Peptidase_M28 (HMM E-Value=6.6e-11)         29   4.0  
SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)                   29   4.0  
SB_39673| Best HMM Match : TRAP-delta (HMM E-Value=1.2e-32)            29   5.3  
SB_8029| Best HMM Match : Mucin (HMM E-Value=8.6)                      29   5.3  
SB_43947| Best HMM Match : efhand (HMM E-Value=2e-11)                  28   7.0  
SB_40497| Best HMM Match : NDT80_PhoG (HMM E-Value=5.1)                28   7.0  
SB_35213| Best HMM Match : Gasdermin (HMM E-Value=4.3)                 28   9.3  
SB_20535| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  

>SB_44379| Best HMM Match : Peptidase_M28 (HMM E-Value=6.6e-11)
          Length = 1098

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +2

Query: 341 NGPTNPLIQMVTNLQNSFLSGMANLTQAINNWNSNQAWSVPNIFGGASTA 490
           +G  NPL+  + N Q   +  M      +N+W  NQ   V ++F    TA
Sbjct: 666 DGQRNPLLLRMINDQLLQIERMFVSAHVVNDWAMNQRILVNDVFSNVETA 715


>SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)
          Length = 3616

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 17  QINELQASLQHFQENFGAQIQKLNETLHFIKPADTIAAPSVEET 148
           QI+ELQA LQ+F +    +I      L  I+  +++   S+ +T
Sbjct: 559 QISELQAQLQNFMDICFEKIPSTQRALRLIRKFESLGLDSLRDT 602


>SB_39673| Best HMM Match : TRAP-delta (HMM E-Value=1.2e-32)
          Length = 504

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
 Frame = +2

Query: 35  ASLQHFQENFGAQIQKLNETLHFIKPADTIAAPSVEETQNKASFETIESGLK--SLETNF 208
           AS    QEN   QI  LNE L  +    T A    E  QN     T  + +K  S+ ++ 
Sbjct: 128 ASASITQENAQKQINHLNELLTTLTDIITSAKEDWEGEQNSVGLLTCGAQVKAPSVNSSS 187

Query: 209 NSGLNQLSEGIQIVAT 256
           NS    + E I +  T
Sbjct: 188 NSPDESVIEAINVFVT 203


>SB_8029| Best HMM Match : Mucin (HMM E-Value=8.6)
          Length = 325

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 18/68 (26%), Positives = 30/68 (44%)
 Frame = +2

Query: 11  TEQINELQASLQHFQENFGAQIQKLNETLHFIKPADTIAAPSVEETQNKASFETIESGLK 190
           TE+    +AS   F+    AQ     E     KP+ T  + + E +  + +F   +S +K
Sbjct: 222 TEESTTNEASTAEFESTTAAQATTKTEAYTTKKPSTTEGSTTTEASTAEFTFTPTKSSVK 281

Query: 191 SLETNFNS 214
           S  T  N+
Sbjct: 282 STHTIKNN 289


>SB_43947| Best HMM Match : efhand (HMM E-Value=2e-11)
          Length = 482

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 341 NGPTNPLIQMVTNLQNSFLSGMANLTQAINNW 436
           +GP +PL+  +     S +SGM N+T    +W
Sbjct: 133 SGPASPLVSNMPTSSASPVSGMKNITSDTQSW 164


>SB_40497| Best HMM Match : NDT80_PhoG (HMM E-Value=5.1)
          Length = 360

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = +2

Query: 11  TEQINELQASLQHFQENFGAQIQKLNETLHFIKPADTIAAPSVEETQNKASFETIESGLK 190
           TE+    +AS   F+    AQ     E     KP+ T  + + E +  + +F   +S +K
Sbjct: 295 TEESTTNEASTAEFESTTAAQATTKTEAYTTKKPSTTEGSTTTEASTAEFTFTPTKSSVK 354

Query: 191 SLET 202
           S  T
Sbjct: 355 STHT 358


>SB_35213| Best HMM Match : Gasdermin (HMM E-Value=4.3)
          Length = 442

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 19/70 (27%), Positives = 33/70 (47%)
 Frame = +2

Query: 5   ARTEQINELQASLQHFQENFGAQIQKLNETLHFIKPADTIAAPSVEETQNKASFETIESG 184
           A  E  N  QA+L+    N  A ++  N T   ++ ++   A        +A+ ETI + 
Sbjct: 363 ATLETSNNTQATLET-SNNTQATLETSNNTQATLETSNNTQATLETSNNTQATLETINNT 421

Query: 185 LKSLETNFNS 214
             +LET+ N+
Sbjct: 422 QATLETSNNN 431


>SB_20535| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 220

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 7/31 (22%), Positives = 16/31 (51%)
 Frame = -1

Query: 105 IKCSVSFNFCI*APKFSWKCCKLAWSSLICS 13
           ++C + +   + +  F W CC + W  ++ S
Sbjct: 169 LRCFIGWRGIVTSSTFEWLCCFIVWREIVTS 199


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,172,805
Number of Sequences: 59808
Number of extensions: 404711
Number of successful extensions: 940
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)