Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0406
         (750 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC039297-1|AAH39297.1| 1204|Homo sapiens fibronectin type III do...    30   7.7  
AY358367-1|AAQ88733.1|  625|Homo sapiens YVTM2421 protein.             30   7.7  
AB098597-1|BAC53727.1| 1204|Homo sapiens FAD104 protein.               30   7.7  

>BC039297-1|AAH39297.1| 1204|Homo sapiens fibronectin type III
           domain containing 3B protein.
          Length = 1204

 Score = 30.3 bits (65), Expect = 7.7
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = +1

Query: 313 HNSFYSNKHQWPYKSFNSNGDQPPEFIPVRNG*SHSSNQQLELEPSMECSKYFWR 477
           H  F  N H   Y      GD PP+F P ++   H+   + E+ P    S Y  R
Sbjct: 130 HPHFIHNSHTAYYPPVTGPGDMPPQFFP-QHHLPHTIYGEQEIIPFYGMSSYITR 183


>AY358367-1|AAQ88733.1|  625|Homo sapiens YVTM2421 protein.
          Length = 625

 Score = 30.3 bits (65), Expect = 7.7
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = +1

Query: 313 HNSFYSNKHQWPYKSFNSNGDQPPEFIPVRNG*SHSSNQQLELEPSMECSKYFWR 477
           H  F  N H   Y      GD PP+F P ++   H+   + E+ P    S Y  R
Sbjct: 126 HPHFIHNSHTAYYPPVTGPGDMPPQFFP-QHHLPHTIYGEQEIIPFYGMSSYITR 179


>AB098597-1|BAC53727.1| 1204|Homo sapiens FAD104 protein.
          Length = 1204

 Score = 30.3 bits (65), Expect = 7.7
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = +1

Query: 313 HNSFYSNKHQWPYKSFNSNGDQPPEFIPVRNG*SHSSNQQLELEPSMECSKYFWR 477
           H  F  N H   Y      GD PP+F P ++   H+   + E+ P    S Y  R
Sbjct: 130 HPHFIHNSHTAYYPPVTGPGDMPPQFFP-QHHLPHTIYGEQEIIPFYGMSSYITR 183


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,928,430
Number of Sequences: 237096
Number of extensions: 2078491
Number of successful extensions: 4358
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4358
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9015132854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)