Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0406
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35604-2|CAA84677.1|  809|Caenorhabditis elegans Hypothetical pr...    31   0.66 
U19744-1|AAA85704.1|  809|Caenorhabditis elegans integrin beta p...    31   0.66 
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p...    30   1.5  
AC087079-12|AAK27874.2|  472|Caenorhabditis elegans Hypothetical...    29   2.7  
U39649-3|AAM69070.1| 1538|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U39649-2|AAM69069.1| 1534|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AL117193-1|CAB54981.1|  767|Caenorhabditis elegans Hypothetical ...    28   6.2  
AL117206-11|CAB60453.3| 1237|Caenorhabditis elegans Hypothetical...    28   8.1  

>Z35604-2|CAA84677.1|  809|Caenorhabditis elegans Hypothetical
           protein ZK1058.2 protein.
          Length = 809

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -1

Query: 642 GACDC*PLWFCWLLFCPWGLKKLLICDGRFCHGAGLCV 529
           G C C P W      CP      L  +G+ C+G G C+
Sbjct: 587 GKCICAPGWTGRACECPISTDSCLSANGKICNGKGECI 624


>U19744-1|AAA85704.1|  809|Caenorhabditis elegans integrin beta
           pat-3 protein.
          Length = 809

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -1

Query: 642 GACDC*PLWFCWLLFCPWGLKKLLICDGRFCHGAGLCV 529
           G C C P W      CP      L  +G+ C+G G C+
Sbjct: 587 GKCICAPGWTGRACECPISTDSCLSANGKICNGKGECI 624


>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
           protein T19D12.1 protein.
          Length = 1844

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = +2

Query: 398 SGMANLTQAINNWNSNQAWSVPNIFGGASTAAPQSDVQXDATTTT 532
           SG A+ T +I +  + QA S  ++    ST+APQS     +TTT+
Sbjct: 802 SGAASTTGSITS--TQQATSTSSVITTGSTSAPQSSTAVSSTTTS 844


>AC087079-12|AAK27874.2|  472|Caenorhabditis elegans Hypothetical
           protein Y37E3.13 protein.
          Length = 472

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = -3

Query: 355 ICRAIGACYCRSCCALSRGGTG 290
           IC  IG C   SCC L  GG G
Sbjct: 338 ICTFIGVCCVISCCVLRTGGGG 359


>U39649-3|AAM69070.1| 1538|Caenorhabditis elegans Hypothetical
           protein T23F2.2b protein.
          Length = 1538

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +2

Query: 23  NELQASLQHFQENFGAQIQK-LNETLHFIKPADTIAAPSVEETQNKASFETIE-SGLK 190
           NE+ A L+H QE F  ++ K LN++++  K  D      +   ++      +E SGLK
Sbjct: 724 NEITARLKHDQEYFEDELAKLLNDSMNIKKERDDYLTEHIRANESMIERLKLEISGLK 781


>U39649-2|AAM69069.1| 1534|Caenorhabditis elegans Hypothetical
           protein T23F2.2a protein.
          Length = 1534

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +2

Query: 23  NELQASLQHFQENFGAQIQK-LNETLHFIKPADTIAAPSVEETQNKASFETIE-SGLK 190
           NE+ A L+H QE F  ++ K LN++++  K  D      +   ++      +E SGLK
Sbjct: 724 NEITARLKHDQEYFEDELAKLLNDSMNIKKERDDYLTEHIRANESMIERLKLEISGLK 781


>AL117193-1|CAB54981.1|  767|Caenorhabditis elegans Hypothetical
           protein Y105C5A.1 protein.
          Length = 767

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 122 IAAPSVEETQNKASFETIESGLKSLETNFNSGLNQLSEG 238
           +  PS + T+NK     I+   + L +NFN+G+  +S G
Sbjct: 215 VVLPSRKSTRNKKDMNQIKED-EELVSNFNNGIGVISRG 252


>AL117206-11|CAB60453.3| 1237|Caenorhabditis elegans Hypothetical
           protein Y67A10A.3 protein.
          Length = 1237

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 23  NELQASLQHFQENFGAQIQKLNETLH 100
           N L   LQ+FQE F  + QKLN+  H
Sbjct: 695 NSLPQILQYFQEMFPVRNQKLNKPSH 720


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,793,250
Number of Sequences: 27780
Number of extensions: 315860
Number of successful extensions: 898
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)