Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0406
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g48160.1 68415.m06031 PWWP domain-containing protein                31   1.1  
At2g30290.1 68415.m03687 vacuolar sorting receptor, putative sim...    29   3.3  
At3g32050.1 68416.m04075 hypothetical protein                          29   4.4  
At2g40435.1 68415.m04988 expressed protein                             28   7.6  

>At2g48160.1 68415.m06031 PWWP domain-containing protein
          Length = 1366

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = +1

Query: 289  FQYRPCSKHNSFYSNKHQWPYKSFNSNG---DQPP 384
            ++Y P S + S Y ++H+ PY S + NG   D PP
Sbjct: 1298 WRYPPSSSYGSRYQDEHKAPYPSSSYNGVRWDNPP 1332


>At2g30290.1 68415.m03687 vacuolar sorting receptor, putative
           similar to vacuolar sorting receptor homolog
           [Arabidopsis thaliana] GI:1737218
          Length = 625

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 352 CRAIGACYCRSCCALSRGGTGTFSCSLSVGFERSHNL 242
           C    AC CR C   +  G+   SCS S+ + R H++
Sbjct: 520 CEEKTACQCRDCKCKNTWGSYECSCSGSLLYIREHDI 556


>At3g32050.1 68416.m04075 hypothetical protein
          Length = 175

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 371 VTNLQNSFLSGMANLTQAINNWNSNQAWSVPNIFGGAST 487
           +T +QN F + +    +A  N N    W   +I GGAST
Sbjct: 93  ITMMQNKFANEVPPSMRATVNTNGGLGWFCTSINGGAST 131


>At2g40435.1 68415.m04988 expressed protein
          Length = 158

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/66 (28%), Positives = 27/66 (40%)
 Frame = +2

Query: 74  IQKLNETLHFIKPADTIAAPSVEETQNKASFETIESGLKSLETNFNSGLNQLSEGIQIVA 253
           IQKL + +       T    S E T  K    T+E+  K    N  SG NQ    + ++ 
Sbjct: 40  IQKLKQKVERFNQDPTAEQSSSEPTDPKTPMVTVETLDKGFMINVFSGKNQPGMLVSVLE 99

Query: 254 TFKADG 271
            F+  G
Sbjct: 100 AFEDIG 105


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,959,103
Number of Sequences: 28952
Number of extensions: 287144
Number of successful extensions: 821
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)