Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0405
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0512 + 18455454-18456121,18456214-18456318,18457493-184576...    28   6.9  
01_01_0870 - 6789903-6792251                                           28   6.9  
11_06_0506 - 24380469-24380632,24381737-24383893,24384488-243845...    28   9.1  

>10_08_0512 +
           18455454-18456121,18456214-18456318,18457493-18457615,
           18457732-18457902,18458076-18458205,18458458-18458670,
           18458757-18458866,18459144-18459186
          Length = 520

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
 Frame = -3

Query: 694 EHHTNVXHVNNQFSKTSFRVEV-GRVLGAGRDDAVIDLLGGAARARYGQTV-IGPVGRTV 521
           EH TN     N   +  + V   GR++  G D A+  LL    +A     V +  +G   
Sbjct: 183 EHATNRFSKENVIGEGGYGVVYRGRLIN-GTDVAIKKLLNNMGQAEKEFRVEVEAIGHVR 241

Query: 520 YTAAL*VCLYDINGLLDVLVYRILSNGSVQ 431
           +   + +  Y + G+  +LVY  ++NG+++
Sbjct: 242 HKNLVRLLGYCVEGIHRMLVYEYVNNGNLE 271


>01_01_0870 - 6789903-6792251
          Length = 782

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 21/69 (30%), Positives = 35/69 (50%)
 Frame = -3

Query: 628 GRVLGAGRDDAVIDLLGGAARARYGQTVIGPVGRTVYTAAL*VCLYDINGLLDVLVYRIL 449
           G + G+    AV +L G     +  +T +  VG   +T  + +  + +NG   +LVY  +
Sbjct: 490 GTLPGSTTVVAVKNLKGVGQAEKQFRTEVQTVGMIRHTNLVRLLGFCVNGNRRLLVYEYM 549

Query: 448 SNGSVQVAH 422
           SNGS+  AH
Sbjct: 550 SNGSLD-AH 557


>11_06_0506 - 24380469-24380632,24381737-24383893,24384488-24384541,
            24384543-24384597,24384914-24384916,24385192-24385231,
            24385576-24385632,24388124-24388412,24389764-24389771,
            24390633-24390688,24391207-24391488,24391651-24391811,
            24391887-24392121,24392860-24392943,24393022-24393117,
            24393333-24394055,24396523-24396987
          Length = 1642

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
 Frame = +1

Query: 595  RRRRGLHRELDQLPLERM---SY*TGCSHEXHWYGARRRWSRYRFGSXP 732
            RRRR   R + QL L ++   S  + CS    W G    W+R  +   P
Sbjct: 1246 RRRRSWSRSMGQLNLIQLCVHSRASRCSKIARWMGVEDWWNRLAYSGLP 1294


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,757,912
Number of Sequences: 37544
Number of extensions: 394413
Number of successful extensions: 994
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)