Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0405
(750 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF274024-1|AAF90150.1| 232|Apis mellifera tetraspanin F139 prot... 103 2e-24
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 7.1
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 7.1
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 7.1
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 7.1
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 7.1
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 7.1
DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like recept... 22 7.1
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 7.1
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 7.1
AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive... 21 9.3
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 21 9.3
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 21 9.3
>AF274024-1|AAF90150.1| 232|Apis mellifera tetraspanin F139
protein.
Length = 232
Score = 103 bits (247), Expect = 2e-24
Identities = 60/196 (30%), Positives = 100/196 (51%), Gaps = 2/196 (1%)
Frame = +2
Query: 80 LEXGMSCVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMNFTDENFYKXXXXXXXXXX 259
+ GM +KYL+F FN +FA+ GL IL +G+ + ++ E
Sbjct: 1 MSCGMGMIKYLLFIFNFVFAVCGLGILTLGVLIHLQILG-VSKQIETGLAFPSITLIVLG 59
Query: 260 XXXXXXXXXXCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGY--MKHTDLEDSVMRNL 433
CCGA++E+HCM ITF+ FLL I + ++AV + + +K+ D ++
Sbjct: 60 SIIFVISFFGCCGAIRESHCMTITFASFLLFILLVQIAVAVYAFIVVKNDDNFRNISEKY 119
Query: 434 NASITQYPVDKNVQKTIDIIQTDLQCCGINSPADWADHGLPIPSTCCSAQEINDGVVAAC 613
Y ++ + ID IQ +LQCCG++S +D+ D PIP++CC++ E N
Sbjct: 120 QEIFNGYFLNSESKDFIDFIQKNLQCCGVHSLSDYNDK--PIPASCCNSPENN------- 170
Query: 614 TENSTNFHSKGCLTKL 661
T + +N ++ GC+ L
Sbjct: 171 TCSISNSYTNGCVEAL 186
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.8 bits (44), Expect = 7.1
Identities = 5/11 (45%), Positives = 10/11 (90%)
Frame = +1
Query: 94 VLCKVPHVLLQ 126
+LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.8 bits (44), Expect = 7.1
Identities = 5/11 (45%), Positives = 10/11 (90%)
Frame = +1
Query: 94 VLCKVPHVLLQ 126
+LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 7.1
Identities = 5/11 (45%), Positives = 10/11 (90%)
Frame = +1
Query: 94 VLCKVPHVLLQ 126
+LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 7.1
Identities = 5/11 (45%), Positives = 10/11 (90%)
Frame = +1
Query: 94 VLCKVPHVLLQ 126
+LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 7.1
Identities = 5/11 (45%), Positives = 10/11 (90%)
Frame = +1
Query: 94 VLCKVPHVLLQ 126
+LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.8 bits (44), Expect = 7.1
Identities = 5/11 (45%), Positives = 10/11 (90%)
Frame = +1
Query: 94 VLCKVPHVLLQ 126
+LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461
>DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like receptor
2 protein.
Length = 581
Score = 21.8 bits (44), Expect = 7.1
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = -3
Query: 46 IVLLRNKMIHTSAN 5
+V+ RNK +HT+ N
Sbjct: 76 VVIARNKSMHTATN 89
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 7.1
Identities = 5/11 (45%), Positives = 10/11 (90%)
Frame = +1
Query: 94 VLCKVPHVLLQ 126
+LC+ PH+++Q
Sbjct: 519 ILCRAPHIIVQ 529
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 7.1
Identities = 5/11 (45%), Positives = 10/11 (90%)
Frame = +1
Query: 94 VLCKVPHVLLQ 126
+LC+ PH+++Q
Sbjct: 519 ILCRAPHIIVQ 529
>AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive
opsin protein.
Length = 371
Score = 21.4 bits (43), Expect = 9.3
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = -1
Query: 543 SAQSAGLFIPQHCKSVCMISMVFWT 469
S+QSA + I + ++C + ++ WT
Sbjct: 264 SSQSAEIRIAKAAITICFLYVLSWT 288
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 21.4 bits (43), Expect = 9.3
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 598 AVIDLLGGAARARYGQTVIGPVGRTVYTAAL 506
A+ID L A R GP GR+V +A L
Sbjct: 967 ALIDELKPATRYTIRVIAEGPAGRSVPSAEL 997
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 21.4 bits (43), Expect = 9.3
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 598 AVIDLLGGAARARYGQTVIGPVGRTVYTAAL 506
A+ID L A R GP GR+V +A L
Sbjct: 963 ALIDELKPATRYTIRVIAEGPAGRSVPSAEL 993
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,997
Number of Sequences: 438
Number of extensions: 3795
Number of successful extensions: 18
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -