Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0403
(550 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch... 215 5e-57
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces... 119 3e-28
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma... 102 4e-23
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb... 97 2e-21
SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha... 84 1e-17
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce... 64 1e-11
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi... 41 1e-04
SPAC1687.14c |||EF hand family protein, unknown role|Schizosacch... 40 2e-04
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma... 37 0.002
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ... 30 0.26
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom... 29 0.60
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p... 28 0.79
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha... 28 0.79
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 28 0.79
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 27 2.4
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 27 2.4
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 27 2.4
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 26 3.2
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 26 3.2
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 25 5.6
SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr 1... 25 7.3
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual 25 7.3
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 25 7.3
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch... 25 9.7
>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 150
Score = 215 bits (524), Expect = 5e-57
Identities = 100/126 (79%), Positives = 115/126 (91%)
Frame = +3
Query: 81 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTI 260
LT+EQIAEF+EAFSLFD+D DG IT+ ELG VMRSLGQ+PT AELQDMINEVDADGNGTI
Sbjct: 6 LTDEQIAEFREAFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEVDADGNGTI 65
Query: 261 DFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDE 440
DF EFLTMMARKMKDTD+EEE+REAF+VFDKDGNG+I+ EL HV+T+LGE+L+ EEV +
Sbjct: 66 DFTEFLTMMARKMKDTDNEEEVREAFKVFDKDGNGYITVEELTHVLTSLGERLSQEEVAD 125
Query: 441 MIREAD 458
MIREAD
Sbjct: 126 MIREAD 131
Score = 70.1 bits (164), Expect = 2e-13
Identities = 34/76 (44%), Positives = 51/76 (67%)
Frame = +3
Query: 69 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADG 248
M D EE++ +EAF +FDKDG+G IT +EL V+ SLG+ ++ E+ DMI E D DG
Sbjct: 78 MKDTDNEEEV---REAFKVFDKDGNGYITVEELTHVLTSLGERLSQEEVADMIREADTDG 134
Query: 249 NGTIDFPEFLTMMARK 296
+G I++ EF +++ K
Sbjct: 135 DGVINYEEFSRVISSK 150
Score = 57.2 bits (132), Expect = 1e-09
Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Frame = +3
Query: 99 AEFKEAFSLFDKDGDGTITTKELGTVM-RSLGQNPTEAELQDMINEVDADGNGTIDFPEF 275
AE ++ + D DG+GTI E T+M R + E E+++ D DGNG I E
Sbjct: 48 AELQDMINEVDADGNGTIDFTEFLTMMARKMKDTDNEEEVREAFKVFDKDGNGYITVEE- 106
Query: 276 LTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTN 404
LT + + + S+EE+ + R D DG+G I+ E V+++
Sbjct: 107 LTHVLTSLGERLSQEEVADMIREADTDGDGVINYEEFSRVISS 149
Score = 25.8 bits (54), Expect = 4.2
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +1
Query: 463 DGDGQVNYEEF 495
DGDG +NYEEF
Sbjct: 133 DGDGVINYEEF 143
Score = 24.6 bits (51), Expect = 9.7
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +1
Query: 463 DGDGQVNYEEFVTMM 507
DG+G +++ EF+TMM
Sbjct: 60 DGNGTIDFTEFLTMM 74
>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 119 bits (286), Expect = 3e-28
Identities = 60/125 (48%), Positives = 85/125 (68%)
Frame = +3
Query: 84 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID 263
++EQ E KEAF L+D D DG I T +G+V+RSLG N T+AEL + NE+ ID
Sbjct: 4 SKEQTDEMKEAFVLYDIDKDGLIPTSHVGSVLRSLGINVTDAELAKLSNEL----GDAID 59
Query: 264 FPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEM 443
+F++ ++ K+++T+SEEE +AFRVFDKD +G+I A+ M LGEKL+D EV M
Sbjct: 60 EKKFMSFVSNKLRETESEEEYIKAFRVFDKDNSGYIETAKFADYMKTLGEKLSDNEVQLM 119
Query: 444 IREAD 458
++EAD
Sbjct: 120 VQEAD 124
Score = 52.4 bits (120), Expect = 4e-08
Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Frame = +3
Query: 63 STMADQLTE-EQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVD 239
S ++++L E E E+ +AF +FDKD G I T + M++LG+ ++ E+Q M+ E D
Sbjct: 65 SFVSNKLRETESEEEYIKAFRVFDKDNSGYIETAKFADYMKTLGEKLSDNEVQLMVQEAD 124
Query: 240 ADGNGTIDFPEFLTMMARK 296
+G+ D+ +F+ + K
Sbjct: 125 PTNSGSFDYYDFVQRIMAK 143
>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 176
Score = 102 bits (244), Expect = 4e-23
Identities = 50/128 (39%), Positives = 73/128 (57%)
Frame = +3
Query: 78 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGT 257
++TEEQ + EAF LFD D D I EL MR+LG N ++E+ ++ + D G G
Sbjct: 30 EITEEQRQDINEAFKLFDSDKDNAIDYHELRAAMRALGFNAEKSEVLKILRDFDKTGKGY 89
Query: 258 IDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVD 437
+ +F+ +M K+ + D EEI+ AF +FD D G IS LR V L E + D+E++
Sbjct: 90 LQMEDFVRVMTEKIVERDPLEEIKRAFELFDDDETGKISLRNLRRVAKELNENIDDQELE 149
Query: 438 EMIREADI 461
MI E D+
Sbjct: 150 AMIEEFDL 157
>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 141
Score = 96.7 bits (230), Expect = 2e-21
Identities = 49/117 (41%), Positives = 78/117 (66%), Gaps = 2/117 (1%)
Frame = +3
Query: 105 FKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTM 284
+K+AFSLFD+ G G I +G ++R+ GQNPT AE+ ++ + + A+ +D +FL +
Sbjct: 8 YKQAFSLFDRHGTGRIPKTSIGDLLRACGQNPTLAEITEIESTLPAE----VDMEQFLQV 63
Query: 285 MARKMK-DTDSE-EEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIR 449
+ R D + EE + F+VFDKD G I ELR+V+T+LGEKL++EE+DE+++
Sbjct: 64 LNRPNGFDMPGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLK 120
Score = 41.9 bits (94), Expect = 6e-05
Identities = 20/62 (32%), Positives = 36/62 (58%)
Frame = +3
Query: 102 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 281
EF + F +FDKD G I EL V+ SLG+ + E+ +++ V +G +++ +F+
Sbjct: 78 EFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVPVK-DGMVNYHDFVQ 136
Query: 282 MM 287
M+
Sbjct: 137 MI 138
>SPAC926.03 |rlc1||myosin II regulatory light chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 83.8 bits (198), Expect = 1e-17
Identities = 44/124 (35%), Positives = 71/124 (57%)
Frame = +3
Query: 78 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGT 257
QLT QI E KEAF+L DKDGDG I +++ T++ SL Q+ +E D IN + N
Sbjct: 41 QLTSSQIQELKEAFALLDKDGDGNIGREDVKTMLTSLNQDASE----DSINHMFESINPP 96
Query: 258 IDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVD 437
I+ FLT M + ++ EAF FD +G I + +R ++++G+++ +EV+
Sbjct: 97 INLAAFLTAMGSMLCRISPRNDLLEAFSTFDDTQSGKIPISTMRDALSSMGDRMDPQEVE 156
Query: 438 EMIR 449
++R
Sbjct: 157 SILR 160
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/46 (26%), Positives = 20/46 (43%)
Frame = +3
Query: 111 EAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADG 248
EAFS FD G I + + S+G E++ ++ + G
Sbjct: 121 EAFSTFDDTQSGKIPISTMRDALSSMGDRMDPQEVESILRSYTSHG 166
>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 174
Score = 64.5 bits (150), Expect = 1e-11
Identities = 41/130 (31%), Positives = 68/130 (52%), Gaps = 5/130 (3%)
Frame = +3
Query: 84 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID 263
+ E+I ++ F D + G+I E ++ S+ NP + L + VD DG G +D
Sbjct: 19 SNEEIERIRKRFIKIDANQSGSIDRNEFLSIP-SVASNPLASRL---FSVVDEDGGGDVD 74
Query: 264 FPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVM-----TNLGEKLTDE 428
F EF+ ++ + EE+++ AF+++D D +G+IS EL V+ TNL E +
Sbjct: 75 FQEFINSLSVFSVHGNKEEKLKFAFKIYDIDRDGYISNGELYLVLKMMVGTNLREDQLQQ 134
Query: 429 EVDEMIREAD 458
VD+ I E D
Sbjct: 135 IVDKTIMEVD 144
>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 40.7 bits (91), Expect = 1e-04
Identities = 20/59 (33%), Positives = 35/59 (59%)
Frame = +3
Query: 222 MINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVM 398
+ N DAD NG IDF EF+ ++ + + +++ AF+++D D NG IS E+ ++
Sbjct: 68 VFNVFDADKNGYIDFKEFICALSVTSRG-ELNDKLIWAFQLYDLDNNGLISYDEMLRIV 125
>SPAC1687.14c |||EF hand family protein, unknown
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 76
Score = 40.3 bits (90), Expect = 2e-04
Identities = 20/54 (37%), Positives = 29/54 (53%)
Frame = +3
Query: 285 MARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMI 446
M+ K + +EE EAF +FD G+I +LR LGE LT E++ M+
Sbjct: 1 MSVSTKRLEMDEEAEEAFDLFDVTHKGYIDFEDLRRSCAQLGENLTKEQLQLML 54
Score = 34.7 bits (76), Expect = 0.009
Identities = 23/62 (37%), Positives = 32/62 (51%)
Frame = +3
Query: 90 EQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFP 269
E E +EAF LFD G I ++L LG+N T+ +LQ M++ A NG +
Sbjct: 9 EMDEEAEEAFDLFDVTHKGYIDFEDLRRSCAQLGENLTKEQLQLMLDL--AGTNGKVSRE 66
Query: 270 EF 275
EF
Sbjct: 67 EF 68
>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 614
Score = 36.7 bits (81), Expect = 0.002
Identities = 22/74 (29%), Positives = 36/74 (48%)
Frame = +3
Query: 213 LQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRH 392
L D N++D DG G +D P T+ A + S +E+REA R + D +G + +
Sbjct: 21 LTDQFNKLDVDGKGYLDQP--TTIKAFEDSKKGSYDEVREAIREVNVDSSGRVEPEDFVG 78
Query: 393 VMTNLGEKLTDEEV 434
+ L + + EV
Sbjct: 79 IFNVLKKGVEGTEV 92
>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 29.9 bits (64), Expect = 0.26
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -3
Query: 476 WPSPSNIGLANHLVDLLVSEFLSEVGHDVAQLGRGDEAVAVLVEDAE 336
W I L ++ L+ FLSE + +G+ DEA+ V+ ++AE
Sbjct: 178 WRVSIGINLLWGIITLVGVSFLSESPRYLVSIGKDDEAIQVMCKNAE 224
>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 409
Score = 28.7 bits (61), Expect = 0.60
Identities = 18/81 (22%), Positives = 35/81 (43%)
Frame = +3
Query: 207 AELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAEL 386
A +++ V + N ID E + K+ + ++ E V +DG+ I+ E
Sbjct: 318 ARYNELVQAVSSSSNSEIDEVEDAETIDSKILEKRNDLNNEEPNSVVAEDGSEIITLDEN 377
Query: 387 RHVMTNLGEKLTDEEVDEMIR 449
EKL D +++E ++
Sbjct: 378 DQSPNEATEKLRDNDLEESLK 398
>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 531
Score = 28.3 bits (60), Expect = 0.79
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = -3
Query: 476 WPSPSNIGLANHLVDLLVSEFLSEVGHDVAQLGRGDEAVAVLVEDAEGLAD 324
W I L ++ ++ FL E + Q+G+ +EAV VL E AE D
Sbjct: 182 WRVSIGINLLWGIITMIGILFLPESPRYLIQVGKDEEAVRVLSESAELFPD 232
>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1011
Score = 28.3 bits (60), Expect = 0.79
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +3
Query: 75 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG--QNPTEAELQDMINEV 236
D+ E A + +S+FD+D +G IT +E+ +G + A L+D+ + +
Sbjct: 538 DETGEVDNATLEACYSIFDRDLNGDITCEEIELACVEIGKERKSISASLRDLNDSI 593
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 28.3 bits (60), Expect = 0.79
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +3
Query: 225 INEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDK 353
I+E D + NG + F + + +KD+ EE+ ++F + D+
Sbjct: 545 ISESDDESNGDMIRDSFDRLSSESIKDSQKTEELHDSFGINDE 587
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 26.6 bits (56), Expect = 2.4
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
Frame = +3
Query: 345 FDKDGNGFISAAELRH--------VMTNLGEKLTDEEVDEMIREAD 458
FD D NG ++ + L +TN +L+ EE+D M+ EA+
Sbjct: 476 FDVDANGILNVSALEKGTGKTQKITITNDKGRLSKEEIDRMVSEAE 521
>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
zf-fungal binuclear cluster type |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 977
Score = 26.6 bits (56), Expect = 2.4
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -2
Query: 219 LEVRLLWGSVLATSSRCPALWS*WCHR 139
LE++ WGS+ A + +W+ W R
Sbjct: 850 LEMKNYWGSISALCDKMSEIWADWVQR 876
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 26.6 bits (56), Expect = 2.4
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
Frame = +3
Query: 345 FDKDGNGFISAAELRH--------VMTNLGEKLTDEEVDEMIREAD 458
FD D NG ++ + L +TN +L+ EE+D M+ EA+
Sbjct: 476 FDVDANGILNVSALEKGTGKTQKITITNDKGRLSKEEIDRMVAEAE 521
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 26.2 bits (55), Expect = 3.2
Identities = 19/85 (22%), Positives = 31/85 (36%)
Frame = +3
Query: 111 EAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMA 290
+ F FD+D DG + +EL + R P N + +G + + +L +
Sbjct: 311 DLFYQFDRDNDGALNNEELSALFRHTPGLPEIWVSSQFPNSTVLNEHGYVTYNGWLAQWS 370
Query: 291 RKMKDTDSEEEIREAFRVFDKDGNG 365
A+ FD DG G
Sbjct: 371 MITLFDYKTTLAYLAYLGFDTDGRG 395
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 26.2 bits (55), Expect = 3.2
Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +3
Query: 147 TITTKELGTVMRSLGQ-NPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEE 323
T + GT+ S+G + E + ++++ T DFPE L+ +++ EE
Sbjct: 545 TTSLHPFGTLYESIGTIGDPKVEYKAILHDFSCH---TYDFPESLSHCVKRLPTPIPAEE 601
Query: 324 IREAFRVFDK 353
+++ + + DK
Sbjct: 602 LQKRYNLRDK 611
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.4 bits (53), Expect = 5.6
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Frame = -3
Query: 464 SNIGLANHLVDLLVSEFLSEVGHDVAQLGRGDEAVAVLVEDAEGLADF-FLAIRVLHLAR 288
SNI AN +++ EFL +G E + VE+ L D AI +
Sbjct: 833 SNIRKANEIMNNRSEEFLRNAASQAEIVGANKERIQKTVENGSQLLDSKSKAIHSNSRSM 892
Query: 287 H-HCQELGKVYR-AVSVRVYFIDHVLK 213
+ HC L + + V++ V +D +L+
Sbjct: 893 YDHCLALAESQKQGVNLEVQTLDRLLQ 919
>SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 484
Score = 25.0 bits (52), Expect = 7.3
Identities = 19/72 (26%), Positives = 33/72 (45%)
Frame = +3
Query: 234 VDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGE 413
V DG+ +P F +A+ KD EE + + +DG+G A L + G+
Sbjct: 414 VGTDGSVYNLYPRFKDRLAQAFKDILGEEIGSKVVTIPAEDGSGV--GAALVSALEAKGK 471
Query: 414 KLTDEEVDEMIR 449
LT + + E ++
Sbjct: 472 ALTSDILAEHLK 483
>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1339
Score = 25.0 bits (52), Expect = 7.3
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -3
Query: 467 PSNIGLANHLVDLLVSEFLSEVGHDVAQLGRGDEAVAV 354
PSNI AN ++ +L + + V HD + DE V+V
Sbjct: 756 PSNIRKANIMIPILQNVQMLFVYHDQFSRAQEDELVSV 793
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/38 (23%), Positives = 19/38 (50%)
Frame = +3
Query: 219 DMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIRE 332
D + + + T + PE + ++ K+KD + E + E
Sbjct: 479 DCLEVLQISVDDTSNIPEIIARLSEKLKDREESEAVTE 516
>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 783
Score = 24.6 bits (51), Expect = 9.7
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = +3
Query: 204 EAELQDMINEVDADGNGTIDFPEFLT--MMARKMKDTDSEEEIREAFRVFDKDGNGFISA 377
E L+ +N + + N ++D P FL MM + + EIR A FD G F
Sbjct: 281 ETLLRYRLNLIMSFQNPSVD-PGFLCLLMMIFALGSMFAHMEIRSASNPFDNPGKQFFDT 339
Query: 378 AEL 386
A L
Sbjct: 340 ARL 342
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,814,435
Number of Sequences: 5004
Number of extensions: 30862
Number of successful extensions: 154
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -