Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0403
         (550 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              26   0.22 
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   1.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.2  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    21   6.2  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    21   8.2  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    21   8.2  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    21   8.2  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    21   8.2  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    21   8.2  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    21   8.2  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 26.2 bits (55), Expect = 0.22
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +3

Query: 117 FSLFDKDGDGTITTKELGTVMRS--LGQNPTEAELQDMINEVDADGNGTIDFPEF 275
           FS +D++ +G +  +EL     +  L +      L  MI+  D DG+G ++  EF
Sbjct: 242 FSHYDRNNNGNLEREELEQFAENEDLEELCRGCNLGHMISYDDTDGDGKLNVNEF 296


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -3

Query: 434 DLLVSEFLS--EVGHDVAQLGRGDEAVAVLVE 345
           DL  S+ L   E+ HDVA  G+G E V++ V+
Sbjct: 163 DLNTSQLLKQVEIPHDVATTGKG-ELVSLTVQ 193


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 324  FLPRYPCPSSCAP 286
            F P Y  P++CAP
Sbjct: 1803 FSPEYDDPANCAP 1815


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 318 PRYPCPSSCAPSLSRTRESLSCRFRP 241
           P  P P    P++ R R  L+ RF P
Sbjct: 372 PPTPFPRFIPPNVYRFRPPLNPRFEP 397


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +1

Query: 124 CSTKTAMAPSRPKSWA 171
           C+T T  AP RP   A
Sbjct: 8   CTTATLAAPQRPSGGA 23


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -2

Query: 318 PRYPCPSSCAPSLSRTRESLSCRFRP 241
           P  P P    P+  R R  L+ RF P
Sbjct: 149 PSTPFPRFIPPNAYRFRPPLNPRFEP 174


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -2

Query: 318 PRYPCPSSCAPSLSRTRESLSCRFRP 241
           P  P P    P+  R R  L+ RF P
Sbjct: 152 PSTPFPRFIPPNAYRFRPPLNPRFEP 177


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -2

Query: 318 PRYPCPSSCAPSLSRTRESLSCRFRP 241
           P  P P    P+  R R  L+ RF P
Sbjct: 152 PSTPFPRFIPPNAYRFRPPLNPRFEP 177


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -2

Query: 318 PRYPCPSSCAPSLSRTRESLSCRFRP 241
           P  P P    P+  R R  L+ RF P
Sbjct: 152 PSTPFPRFIPPNAYRFRPPLNPRFEP 177


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -2

Query: 318 PRYPCPSSCAPSLSRTRESLSCRFRP 241
           P  P P    P+  R R  L+ RF P
Sbjct: 152 PSTPFPRFIPPNAYRFRPPLNPRFEP 177


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,628
Number of Sequences: 438
Number of extensions: 2009
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)