Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0399
         (517 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2F322 Cluster: Beige/BEACH domain containing protein; ...    32   6.8  
UniRef50_Q6LZD2 Cluster: Leucyl-tRNA synthetase; n=5; Methanococ...    32   8.9  

>UniRef50_A2F322 Cluster: Beige/BEACH domain containing protein; n=1;
            Trichomonas vaginalis G3|Rep: Beige/BEACH domain
            containing protein - Trichomonas vaginalis G3
          Length = 2460

 Score = 32.3 bits (70), Expect = 6.8
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = +3

Query: 303  IYDRFVHNDFIMFFYYLINDGKNCIKTKKYIVIS--CFE 413
            I ++    DF++F Y+LI  G+N IK   ++V +  CFE
Sbjct: 1362 ILEKMSKFDFVIFLYFLITKGRNLIKEFVFLVKNKECFE 1400


>UniRef50_Q6LZD2 Cluster: Leucyl-tRNA synthetase; n=5;
           Methanococcus|Rep: Leucyl-tRNA synthetase -
           Methanococcus maripaludis
          Length = 955

 Score = 31.9 bits (69), Expect = 8.9
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = +3

Query: 207 IIFEDKQKKQLNVISSYNLKNIVSGLNGAF*TIYDRFVHNDFIMFFYYLIND 362
           ++ E+  +K+L++I  + L    S +N A  T Y+ F      + FY LIND
Sbjct: 708 VMEEESAEKELSLIDKWLLHKTYSSINSAE-TAYEEFQLRKIGLMFYELIND 758


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 367,305,743
Number of Sequences: 1657284
Number of extensions: 5907406
Number of successful extensions: 12133
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 11812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12129
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 31782822356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)