Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0399
         (517 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0582 + 18993816-18993890,18994050-18994446,18995645-189957...    28   3.9  
06_03_0517 - 21674155-21674334,21674420-21674674,21674829-216749...    28   3.9  

>08_02_0582 +
           18993816-18993890,18994050-18994446,18995645-18995748,
           18995863-18996004,18996118-18996237,18996341-18996465,
           18996903-18997061,18997161-18997323,18997420-18997545,
           18997628-18997711,18997761-18998173,18998199-18998273,
           18998463-18998663,18998862-18998971,18999072-18999156,
           18999365-18999493,18999596-18999701,18999825-18999913,
           19000064-19000366
          Length = 1001

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -2

Query: 516 FFFFFLYTNLHIILPFL 466
           F F+FLY NL I+L FL
Sbjct: 442 FVFYFLYINLQIVLAFL 458


>06_03_0517 -
           21674155-21674334,21674420-21674674,21674829-21674969,
           21675070-21675228,21676578-21676738,21680167-21680302
          Length = 343

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = -1

Query: 148 FLPFINYLPNSYFTVVVTTDDYR 80
           + P++++LPN  F  +V+T ++R
Sbjct: 242 YFPYLSWLPNKSFDTIVSTTEFR 264


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,113,587
Number of Sequences: 37544
Number of extensions: 137295
Number of successful extensions: 224
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)