Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0397
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual     27   1.8  
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar...    27   1.8  
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    27   3.2  
SPAC824.03c |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.4  
SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   7.4  
SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomy...    25   9.8  
SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po...    25   9.8  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    25   9.8  

>SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 301

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +2

Query: 77  CILLKKNHTYLVMAFLQHKGRAANHFN----LEMDSAVSDEPRDVAED 208
           C+ L+K      +A L  +GR  N FN    L++D    D P+++  D
Sbjct: 24  CLTLEKPTCRTCLASLTPEGRKNNRFNTSVLLQVDDGSGDRPKNILID 71


>SPBC26H8.09c |snf59||SWI/SNF complex subunit
           Snf59|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 515

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
 Frame = +2

Query: 341 KKVTNKEXXXXXXXXXXXXXTPKNAVMVINEMIPKEQIANNFKVE-PNPNKHFKQTTPTY 517
           K+ TN +             + K +  + N  + + +   NFK+E P P+  F+   P  
Sbjct: 104 KESTNLDDLNMSEEPKHHDSSNKESTNLDNSNMDESENQKNFKIEEPKPSGDFRNEGPKQ 163

Query: 518 CADLTID 538
           C D  I+
Sbjct: 164 CDDSKIE 170


>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 78  AYY*KKITHISLWRFYNTRVGPP 146
           AYY + +TH SLW  Y  R   P
Sbjct: 147 AYYWRSLTHDSLWYGYTNRPSIP 169


>SPAC824.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +2

Query: 101 TYLVMAFLQHKGRAANHFNLEMDSAVSDEPRDVAEDAACVG 223
           T +V++   +KG     F  E++ ++S  P D     AC+G
Sbjct: 100 TKVVVSCKSNKGSIGPRFVRELEGSLSSYPTDTLGILACLG 140


>SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 85

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 86  LKKNHTYLVMAFLQHKGRAANH 151
           L++N  YL++ +L  +G +ANH
Sbjct: 52  LRENKNYLIIVYLPIEGFSANH 73


>SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 144 AARPLCCKNAITRYV*FFFNSMHVSMFVYLQFPELRXRY 28
           A  PL   N + + +  FF +    MF+YL F  L  ++
Sbjct: 19  AVYPLARDNIVRQSISLFFLTWFGGMFLYLTFASLSYQF 57


>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 596

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +3

Query: 195 MSPRMQPASDKTMHHFSLTRMVWR 266
           ++P + PA+  T H+++LT  ++R
Sbjct: 525 VTPALMPANTDTRHYWNLTSNIYR 548


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
            Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +1

Query: 265  GNRRKEIGWLQGRTAFVDEK*TTGSEESDKQGTSPQTEPAPQATPHA 405
            G+ + E  W     A  DE+    ++ + K+    QTE +  +TP A
Sbjct: 1175 GSTKNEENWEVALAAAEDEEDVQAAQVARKESALEQTEFSETSTPQA 1221


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,694,712
Number of Sequences: 5004
Number of extensions: 55228
Number of successful extensions: 177
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)