Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0397
         (665 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0017 + 11677029-11677100,11677992-11678030,11678169-116783...    32   0.47 
10_08_0913 + 21527267-21527377,21528290-21528742                       31   1.1  
06_03_0191 - 17720512-17721435,17721718-17721843,17721940-177221...    28   7.7  
03_05_0190 - 21770610-21770641,21770741-21770811,21771058-217711...    28   7.7  
01_01_0608 - 4513604-4513701,4513790-4513919,4514027-4514116,451...    28   7.7  

>01_03_0017 +
           11677029-11677100,11677992-11678030,11678169-11678341,
           11679068-11679284,11679518-11679688,11679781-11679941,
           11680025-11681069,11681320-11681466,11681547-11681774,
           11681863-11682020,11682124-11682493
          Length = 926

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +1

Query: 328 TTGSEESDKQGTSPQTEPAPQATPHAEECSHGDQRNDS*GADCQ*FQSGAKPEQA 492
           T GSEESD    +    P+P A  ++  C+   Q+N     D +  +S  KP  A
Sbjct: 527 TKGSEESDNNDATVPDFPSPGAN-YSTPCAPSKQQNSELHGDSEILKSTTKPSSA 580


>10_08_0913 + 21527267-21527377,21528290-21528742
          Length = 187

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = +2

Query: 467 KVEPNPNKH--FKQTTPTYCADLTIDGTVYQGYGENKLLARSAAAEQAVRDIIIKKIKKC 640
           K   NP+KH  FKQ T  Y    T+D  + + +    L  R+   + AV     K IK  
Sbjct: 66  KRSKNPHKHISFKQRTIAYMEPFTLDVFISKRFVSASLTHRTTCRQVAVAGTNSKDIKAA 125

Query: 641 AESSTE 658
            +S ++
Sbjct: 126 LKSRSD 131


>06_03_0191 - 17720512-17721435,17721718-17721843,17721940-17722140,
            17722189-17722332,17722415-17722722,17723433-17723568,
            17723748-17723841,17723976-17724073,17724951-17725004,
            17725704-17726150,17726227-17726393,17726540-17726663,
            17726751-17726837,17727000-17727056,17727492-17727560,
            17727664-17727811,17727893-17728116,17728842-17728958,
            17729649-17729742,17730573-17730640,17733278-17733334,
            17733412-17733511,17733638-17733674,17734077-17734200,
            17735254-17735322,17735371-17735410,17735905-17735993,
            17736849-17736953,17737033-17737104,17737814-17737936,
            17738049-17738117,17738966-17739059,17739145-17739231,
            17740184-17740351,17740436-17740552,17741484-17741590,
            17741671-17741803,17742564-17742667,17743504-17743629,
            17744148-17744216,17744996-17745064,17745278-17745358,
            17745444-17745533,17745896-17746000,17747803-17747873,
            17748320-17748461,17749266-17749330,17750081-17750168,
            17750236-17750325,17750437-17750673,17751064-17751170,
            17751625-17751832,17752376-17752546
          Length = 2366

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
 Frame = +2

Query: 455  ANNFKVEPNPNKHFKQTTPTYCADLTIDGTVYQGYGE---NKLLARSAAAE--QAVRDII 619
            AN F   P  NKH +  T  + A+      V  G      + LLARSA AE      D +
Sbjct: 1283 ANKFSQFPQRNKHLRYRTRVFAAECVSHVPVAVGTEPAHFDLLLARSAVAEGVHLSNDWL 1342

Query: 620  IKKIKKCAESS 652
            I K+++    S
Sbjct: 1343 ILKLQELVSLS 1353


>03_05_0190 -
           21770610-21770641,21770741-21770811,21771058-21771168,
           21771249-21771500,21771584-21772086,21772188-21773234,
           21773361-21773768,21773814-21773956,21774020-21774053
          Length = 866

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -2

Query: 484 RVWLHFEIIGNLLLRNHFVDHHDCILRREESPEVLVL 374
           RV+LHF+    +L   +F DH+ C+L   +   V+VL
Sbjct: 778 RVFLHFQNKRVVLAAYNFNDHYICLLIHPKDGTVVVL 814


>01_01_0608 -
           4513604-4513701,4513790-4513919,4514027-4514116,
           4514225-4514330,4514442-4514542,4514678-4514773,
           4514860-4514959,4515133-4515269,4515563-4515661,
           4515740-4515937,4516058-4516235,4516635-4516690,
           4516781-4516933,4517248-4517340,4517422-4517523,
           4517609-4517650,4517812-4517855,4518087-4518186,
           4518323-4518394,4518499-4518621,4519309-4519452
          Length = 753

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/58 (22%), Positives = 28/58 (48%)
 Frame = +2

Query: 422 VINEMIPKEQIANNFKVEPNPNKHFKQTTPTYCADLTIDGTVYQGYGENKLLARSAAA 595
           V+    P E+  N + + P P ++FK  T  + +    DG +++ +   ++L +   A
Sbjct: 215 VVTAAPPSEEELNPYSIFPQPEENFKVHTEIFYS----DGNIWRAHNSKEILEKHLKA 268


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,207,948
Number of Sequences: 37544
Number of extensions: 391782
Number of successful extensions: 1357
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1355
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)