Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0397
         (665 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3066| Best HMM Match : dsrm (HMM E-Value=2.2e-32)                   31   1.1  
SB_10195| Best HMM Match : CXC (HMM E-Value=0.003)                     28   5.9  
SB_56088| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_28392| Best HMM Match : Exo_endo_phos (HMM E-Value=0.77)            28   7.9  
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_3322| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.9  
SB_1067| Best HMM Match : Trigger_C (HMM E-Value=0.73)                 28   7.9  
SB_44419| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_3066| Best HMM Match : dsrm (HMM E-Value=2.2e-32)
          Length = 429

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +2

Query: 512 TYCADLTIDGTVYQGYGENKLLARSAAAEQAVRDII 619
           T+   +T++G  Y+G G +K  A+  AAE+A++  +
Sbjct: 85  TFVVAVTVNGQTYEGKGSSKQRAKHDAAEKALQSCV 120


>SB_10195| Best HMM Match : CXC (HMM E-Value=0.003)
          Length = 1365

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +3

Query: 54  ADTQTLIHAYY*KKITHISLWRFYNTRVGPPIIST 158
           A T TL      KKIT I +W  YN+ V  PI +T
Sbjct: 421 AGTATLEQDPQPKKITSIPVWSAYNSLVTEPIPTT 455


>SB_56088| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -2

Query: 439 NHFVDHHDCILRREESPEVLVLSAATFLVCHFLHSR*FTFHPRRQF 302
           NHFV  H C+  + ES   L+       VC  + S   T +PR+ F
Sbjct: 88  NHFVIQHSCVFVQWESSIALLDVCQQVFVC--IISPKITLYPRKGF 131


>SB_28392| Best HMM Match : Exo_endo_phos (HMM E-Value=0.77)
          Length = 549

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 20/70 (28%), Positives = 31/70 (44%)
 Frame = +2

Query: 125 QHKGRAANHFNLEMDSAVSDEPRDVAEDAACVGQDNAPLQFDTNGMEGIEEKKLAGSKEE 304
           Q K   ANH ++ +DS  SD PR+       +  +  PLQ   + +  I E    G    
Sbjct: 91  QKKKETANHTSV-VDSPPSDRPRNTRMVPVTLMANVRPLQPKMDELFSITEVIRPGILCL 149

Query: 305 LPSWMKSKLP 334
             +W+ S +P
Sbjct: 150 TETWLNSSIP 159


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +3

Query: 486  TSTSSKRPPRTAQTSPLTAPCT--KDTVRTS 572
            T+TS+  PP T  T+P T P T  K T + S
Sbjct: 5600 TTTSTTLPPITTTTTPTTTPTTPPKSTTKAS 5630


>SB_3322| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 777

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = +1

Query: 334 GSEESDKQGTSPQTEPAPQATPH---AEECSHGDQ 429
           GSE S+  G S +  P  +  PH    + C+HG+Q
Sbjct: 625 GSENSNNSGRSSRGVPRKKLDPHLYLLKPCAHGEQ 659


>SB_1067| Best HMM Match : Trigger_C (HMM E-Value=0.73)
          Length = 639

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +2

Query: 518 CADLTIDGTVYQGYGENKLLARSAAAEQAVRDIIIKKIKKCA 643
           CA   IDG V Q   E  L A    A QA+ +  ++ I +CA
Sbjct: 271 CALQAIDGCVLQAIDECALQAIDECALQAIDERALQAIDECA 312


>SB_44419| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 203

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +2

Query: 515 YCADLTIDGTVYQGYGENKLLARSAAAEQAVRDIIIKKIKKCAE 646
           Y  D TI  T+ +G   N   A +A +EQA  D      +KC E
Sbjct: 85  YVYDTTISETIARGSSSNIRAAVNALSEQASADKFKLNERKCEE 128


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,713,214
Number of Sequences: 59808
Number of extensions: 432165
Number of successful extensions: 1435
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1435
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)