Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0397
         (665 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    41   1e-05
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   3.5  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   3.5  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   3.5  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    22   4.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   4.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.0  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 40.7 bits (91), Expect = 1e-05
 Identities = 25/72 (34%), Positives = 36/72 (50%)
 Frame = +2

Query: 404 PKNAVMVINEMIPKEQIANNFKVEPNPNKHFKQTTPTYCADLTIDGTVYQGYGENKLLAR 583
           PKNAV  +NE+  K         +  P        P +   + IDG  Y+G G  K +A+
Sbjct: 34  PKNAVCALNEL--KSGAVYKVVDQTGPTH-----APIFTIAVQIDGQTYEGKGRTKKMAK 86

Query: 584 SAAAEQAVRDII 619
            AAAE A+R+I+
Sbjct: 87  HAAAELALRNIV 98


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 16/80 (20%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
 Frame = +2

Query: 407 KNAVMVINEMIPKEQIANNFKVEPNPNKHFKQTTPTYCA-----DLTIDGTVYQGY-GEN 568
           +N +  ++ +  K  +   +  +P  N+  K+T    CA     ++     +Y GY G  
Sbjct: 182 ENELRALSSLFSKGCLVGTWSPDPAINRRLKETYSNMCALCEKPEVCDYPDIYSGYEGAL 241

Query: 569 KLLARSAAAEQAVRDIIIKK 628
           + LA +       + I +K+
Sbjct: 242 RCLAHNGGEIAWTKVIYVKR 261


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 16/80 (20%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
 Frame = +2

Query: 407 KNAVMVINEMIPKEQIANNFKVEPNPNKHFKQTTPTYCA-----DLTIDGTVYQGY-GEN 568
           +N +  ++ +  K  +   +  +P  N+  K+T    CA     ++     +Y GY G  
Sbjct: 182 ENELRALSSLFSKGCLVGTWSPDPAINRRLKETYSNMCALCEKPEVCDYPDIYSGYEGAL 241

Query: 569 KLLARSAAAEQAVRDIIIKK 628
           + LA +       + I +K+
Sbjct: 242 RCLAHNGGEIAWTKVIYVKR 261


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 16/80 (20%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
 Frame = +2

Query: 407 KNAVMVINEMIPKEQIANNFKVEPNPNKHFKQTTPTYCA-----DLTIDGTVYQGY-GEN 568
           +N +  ++ +  K  +   +  +P  N+  K+T    CA     ++     +Y GY G  
Sbjct: 182 ENELRALSSLFSKGCLVGTWSPDPAINRRLKETYSNMCALCEKPEVCDYPDIYSGYEGAL 241

Query: 569 KLLARSAAAEQAVRDIIIKK 628
           + LA +       + I +K+
Sbjct: 242 RCLAHNGGEIAWTKVIYVKR 261


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 431 EMIPKEQIANNFKVEPNPNKHFKQT 505
           ++I   Q A+N ++EP P    +QT
Sbjct: 173 DVIEVIQKAHNMELEPTPGNTLRQT 197


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = +2

Query: 404 PKNAVMVINEMIPKEQIANNFKVEPNPNKHFKQTTP 511
           PK++       IPK  ++     +P PN    Q +P
Sbjct: 356 PKSSESSTGSSIPKLNLSTALMSQPPPNFGVSQVSP 391


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 265  GNRRKEIGWLQG 300
            G RRKE  WL+G
Sbjct: 991  GKRRKEPPWLEG 1002


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +3

Query: 459 IISKWSQTRTSTSSKRPPRTAQTSPLTAP 545
           I +  + T T+T++   P T Q +  T P
Sbjct: 661 ITTTTTTTTTTTTTTTTPNTTQNASATTP 689


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,968
Number of Sequences: 438
Number of extensions: 3840
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)