Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0397
(665 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g13220.2 68414.m01534 nuclear matrix constituent protein-rela... 31 0.52
At3g21710.2 68416.m02739 expressed protein 31 0.69
At3g21710.1 68416.m02738 expressed protein 31 0.69
At1g08410.1 68414.m00930 GTP-binding family protein contains Pfa... 31 0.69
At5g64700.1 68418.m08132 nodulin MtN21 family protein similar to... 30 1.2
At3g01860.1 68416.m00130 expressed protein 29 2.1
At1g49320.1 68414.m05528 BURP domain-containing protein similari... 29 2.1
At5g04390.1 68418.m00431 zinc finger (C2H2 type) family protein ... 29 3.7
At1g71200.1 68414.m08215 basic helix-loop-helix (bHLH) family pr... 29 3.7
At3g47580.1 68416.m05180 leucine-rich repeat transmembrane prote... 28 4.9
At1g08845.1 68414.m00986 expressed protein 28 4.9
At3g01860.2 68416.m00131 expressed protein 28 6.4
At2g44640.1 68415.m05556 expressed protein 27 8.5
At1g23200.1 68414.m02898 pectinesterase family protein contains ... 27 8.5
>At1g13220.2 68414.m01534 nuclear matrix constituent protein-related
similar to nuclear matrix constituent protein 1 (NMCP1)
[Daucus carota] GI:2190187
Length = 1128
Score = 31.5 bits (68), Expect = 0.52
Identities = 21/69 (30%), Positives = 29/69 (42%)
Frame = +2
Query: 71 DTCILLKKNHTYLVMAFLQHKGRAANHFNLEMDSAVSDEPRDVAEDAACVGQDNAPLQFD 250
DT K+ V Q G+ H+NL V P DV ED A G+D+A +
Sbjct: 973 DTATGGKRRRQQTVAVLPQTPGQ--RHYNLRRKKTVDQVPADV-EDNAAAGEDDADIAAS 1029
Query: 251 TNGMEGIEE 277
+ +EE
Sbjct: 1030 APSKDTVEE 1038
>At3g21710.2 68416.m02739 expressed protein
Length = 211
Score = 31.1 bits (67), Expect = 0.69
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +1
Query: 250 HEWYGGNRRKEIGWLQGRTAFVDEK*TTGSEESDKQGTSPQTEPAPQATPHAEECSH 420
H+ +GG+ ++E GW F ++ TT EE+D Q S + A + ++ +H
Sbjct: 27 HDSHGGDHQEESGWTTYLDDFSNQYRTTHHEENDHQDKSSYSLLATSTSLVSDAATH 83
>At3g21710.1 68416.m02738 expressed protein
Length = 175
Score = 31.1 bits (67), Expect = 0.69
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +1
Query: 250 HEWYGGNRRKEIGWLQGRTAFVDEK*TTGSEESDKQGTSPQTEPAPQATPHAEECSH 420
H+ +GG+ ++E GW F ++ TT EE+D Q S + A + ++ +H
Sbjct: 27 HDSHGGDHQEESGWTTYLDDFSNQYRTTHHEENDHQDKSSYSLLATSTSLVSDAATH 83
>At1g08410.1 68414.m00930 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 589
Score = 31.1 bits (67), Expect = 0.69
Identities = 18/77 (23%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Frame = +2
Query: 407 KNAVMVINEMIPKEQIANNFKVE-PNPNKHFKQTTPTYCADLTIDGTVYQGY-GENKLLA 580
+ A+ V+ + +P+ I + + + P P + +Q+ P + A+L +GY + L
Sbjct: 390 REAIQVVADKVPRRVIESVYNISLPKPKTYERQSRPPHAAELLKSYCASRGYVASSGLPD 449
Query: 581 RSAAAEQAVRDIIIKKI 631
+ AA ++D I K+
Sbjct: 450 ETKAARLILKDYIGGKL 466
>At5g64700.1 68418.m08132 nodulin MtN21 family protein similar to
MtN21 GI:2598575 (root nodule development) from
[Medicago truncatula]; contains Pfam profile PF00892:
Integral membrane protein
Length = 359
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/53 (35%), Positives = 30/53 (56%)
Frame = -3
Query: 477 GSTLKLLAICSLGIISLITMTAFFGVRSRLRCWFCLRRRSLFVTFFTPGSLLF 319
G L+L+A+ G I +T A++ L+ W +R +F++ FTP SLLF
Sbjct: 249 GWNLRLVAVIYCGFI--VTGVAYY-----LQSWVIEKRGPVFLSMFTPLSLLF 294
>At3g01860.1 68416.m00130 expressed protein
Length = 223
Score = 29.5 bits (63), Expect = 2.1
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Frame = +1
Query: 256 WYGGNRRKEI-----GWLQGRTAFVDEK*TTGSEESDKQGTSPQTEPAPQATPH-AEECS 417
W GN+ I GWL D+ + G E + +GT+P TPH EE
Sbjct: 57 WDSGNKEDMIFFDSRGWLDSDCD--DDFMSVGGEFTPSRGTTPVHHKFCDQTPHQGEENK 114
Query: 418 HGDQRNDS 441
HG++ ++
Sbjct: 115 HGEEEEEA 122
>At1g49320.1 68414.m05528 BURP domain-containing protein similarity
to SP|Q08298 Dehydration-responsive protein RD22
precursor {Arabidopsis thaliana}; contains Pfam profile
PF03181: BURP domain
Length = 280
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +3
Query: 135 VGPPI--ISTSKWILQYLMSRVMSPRMQPASDKTMHHFSLTRMVW 263
VGP + + TS W ++ +V+ +M+P S H F L +VW
Sbjct: 235 VGPAVCHMDTSTWDADHVAFKVL--KMEPRSAPVCHFFPLDNIVW 277
>At5g04390.1 68418.m00431 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 362
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -2
Query: 442 RNHFVDHHDCILRREESPEVLVLSAATFLVCHF 344
+NH +H ++ E P+ LVLSA T + CH+
Sbjct: 332 QNHEQEHQQ--KKQREEPKSLVLSAPTLVDCHY 362
>At1g71200.1 68414.m08215 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 255
Score = 28.7 bits (61), Expect = 3.7
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Frame = -2
Query: 469 FEIIGNLLLRNHFVDHHDCILRREESPEVLVLSAATFLVCHFLHSR*FTFHPRRQFFLGA 290
+E + + L+ D +L E + VLSA+T VC + FH + + +
Sbjct: 180 YEAVVQICLKKENEDEFSNLLHVMEVQGLSVLSASTSQVCREQRVVCYNFHVKVLCLILS 239
Query: 289 SQFLF---FDSLHTI 254
S FLF FD + T+
Sbjct: 240 SSFLFSLCFDRMETM 254
>At3g47580.1 68416.m05180 leucine-rich repeat transmembrane protein
kinase, putative protein kinase Xa21 - Oryza sativa,
PIR:A57676
Length = 1011
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -3
Query: 474 STLKLLAIC-SLGIISLITMTAFFGVRSRLRCWFCLRRRSLFVTFFTPGSLLFIHE 310
S LK +AI S+GI L+ + + S + CWF RR++ P L HE
Sbjct: 638 SHLKKVAILVSIGIALLLLLV----IASMVLCWFRKRRKNQQTNNLVPSKLEIFHE 689
>At1g08845.1 68414.m00986 expressed protein
Length = 189
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Frame = +2
Query: 467 KVEPNPNKH--FKQTTPTYCADLTIDGTVYQGYGENKLLARSAAAEQAVRDIIIKKIKKC 640
K NP+KH FKQ T Y T+D + + + L R + AV K +K
Sbjct: 68 KKSKNPDKHVSFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKDVKAV 127
Query: 641 AES 649
S
Sbjct: 128 LRS 130
>At3g01860.2 68416.m00131 expressed protein
Length = 159
Score = 27.9 bits (59), Expect = 6.4
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +1
Query: 286 GWLQGRTAFVDEK*TTGSEESDKQGTSPQTEPAPQATPH-AEECSHGDQRNDS 441
GWL D+ + G E + +GT+P TPH EE HG++ ++
Sbjct: 8 GWLDSDCD--DDFMSVGGEFTPSRGTTPVHHKFCDQTPHQGEENKHGEEEEEA 58
>At2g44640.1 68415.m05556 expressed protein
Length = 451
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 201 PRMQPASDKTMHHFSLTRMVWRESKKRNWL 290
P + PASDK + FSL ++ S WL
Sbjct: 64 PSLAPASDKRLGSFSLNSLLLSPSSNNWWL 93
>At1g23200.1 68414.m02898 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 554
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -2
Query: 265 LHTIRVKLKWCIVLSDAGCILGDITRLIRYCRIHFEVEMIG 143
LH+ R L+ C + I GD T +++ C I+ M G
Sbjct: 384 LHSSRQFLRNCNIYGTVDFIFGDATAILQNCNIYARKPMSG 424
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,383,026
Number of Sequences: 28952
Number of extensions: 303690
Number of successful extensions: 989
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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