Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0396
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0853 - 32468690-32468857,32469398-32469535,32469930-324701...    30   2.0  

>01_06_0853 -
           32468690-32468857,32469398-32469535,32469930-32470145,
           32470280-32470356,32470483-32470549,32471264-32471866,
           32471971-32472258
          Length = 518

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 593 VHGLLSLLNIKLIY*AVNCVSNKIAASSTYQTVS 492
           VH  LSL ++KL+  A+NC  N +    TY  +S
Sbjct: 279 VHRGLSLDDVKLVKNAMNCTVNDVLVGITYSALS 312


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,352,908
Number of Sequences: 37544
Number of extensions: 293298
Number of successful extensions: 544
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)