Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0396
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15535| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.90 
SB_5361| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.8  
SB_49518| Best HMM Match : DUF1410 (HMM E-Value=4.7)                   29   4.8  
SB_58212| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-38)                 28   8.4  

>SB_15535| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 837

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 11/46 (23%), Positives = 23/46 (50%)
 Frame = -1

Query: 478 DHISRAHRRAGSRELNATSNLPTSTISFAFHSHVNMHIVSNLSAIW 341
           D ++R H  +G  E+     +P + + F F   ++MH   N+  ++
Sbjct: 211 DSVARTHFFSGDEEIIYDDTIPATVLDFEFFHGISMHTFDNIRPLF 256


>SB_5361| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1562

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = -1

Query: 475  HISRAHRRAGS--RELNATSNLPTSTISFAFHSHVNMHIVSNLSAIWMXXXXXXXXXXLV 302
            H  RA +R+ S  RE+     +P + + F F   ++MH   N+  ++            V
Sbjct: 957  HFFRAMKRSVSAMREIIYNDTIPATVLDFEFFQGISMHTFDNIRPLFSGVTKGNDHFSNV 1016

Query: 301  MYS 293
            +Y+
Sbjct: 1017 VYT 1019


>SB_49518| Best HMM Match : DUF1410 (HMM E-Value=4.7)
          Length = 172

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -1

Query: 502 KQFLQTFPDHISRAHRRAGSRELNATSN 419
           ++++ T P+HI++ +RR   REL  T N
Sbjct: 143 EKYVNTKPEHINQGNRRKYQRELGYTGN 170


>SB_58212| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-38)
          Length = 352

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 499 QFLQTFPDHISRAHRRAGSRELNATSNLPTSTIS 398
           Q ++   +H+ R HR A S EL  T N  T   S
Sbjct: 308 QRIRNLENHVPRIHRHASSFELKVTENKGTDVRS 341


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,501,615
Number of Sequences: 59808
Number of extensions: 368453
Number of successful extensions: 775
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)