Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0396
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040646-6|AAK31540.1|  510|Caenorhabditis elegans Hypothetical ...    31   1.0  
AF040646-5|AAK31539.1|  492|Caenorhabditis elegans Hypothetical ...    31   1.0  
AL110487-6|CAB54433.2|  472|Caenorhabditis elegans Hypothetical ...    28   7.4  

>AF040646-6|AAK31540.1|  510|Caenorhabditis elegans Hypothetical
           protein H17B01.1b protein.
          Length = 510

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 342 GCCNFPANLVLYWLCTQRRN*FDKEKKRD-IYIRFCVKVIVF 220
           GC N P  L+  W+    ++ FDKE  R+   + + V V VF
Sbjct: 65  GCVNAPGGLITEWIIGSHKDLFDKELSRENADLAWSVAVSVF 106


>AF040646-5|AAK31539.1|  492|Caenorhabditis elegans Hypothetical
           protein H17B01.1a protein.
          Length = 492

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 342 GCCNFPANLVLYWLCTQRRN*FDKEKKRD-IYIRFCVKVIVF 220
           GC N P  L+  W+    ++ FDKE  R+   + + V V VF
Sbjct: 47  GCVNAPGGLITEWIIGSHKDLFDKELSRENADLAWSVAVSVF 88


>AL110487-6|CAB54433.2|  472|Caenorhabditis elegans Hypothetical
           protein Y39E4B.7 protein.
          Length = 472

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 249 YRYLFFFLCQTSFAFEYI 302
           YRY FFFLC  S    Y+
Sbjct: 145 YRYFFFFLCSLSIHMMYV 162


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,829,553
Number of Sequences: 27780
Number of extensions: 288686
Number of successful extensions: 637
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)