Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0396
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g30250.1 68416.m03822 hypothetical protein                          29   3.0  
At2g44930.1 68415.m05593 expressed protein contains Pfam profile...    29   3.0  
At4g19490.2 68417.m02867 expressed protein                             28   5.2  
At4g19490.1 68417.m02866 expressed protein                             28   5.2  
At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative si...    28   5.2  
At2g26870.1 68415.m03224 phosphoesterase family protein low simi...    28   6.8  
At3g44670.1 68416.m04804 disease resistance protein RPP1-Ws[A,C]...    27   9.0  

>At3g30250.1 68416.m03822 hypothetical protein
          Length = 193

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/42 (33%), Positives = 26/42 (61%)
 Frame = -2

Query: 315 VLYWLCTQRRN*FDKEKKRDIYIRFCVKVIVFLNKIINMSTQ 190
           ++ WL  ++ N   KE+K++ + R C+ VIV +  I+  S+Q
Sbjct: 116 IIEWLKKEKMN--PKEEKKENWRRLCLAVIVIVEGILIRSSQ 155


>At2g44930.1 68415.m05593 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 515

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/48 (31%), Positives = 29/48 (60%)
 Frame = -3

Query: 401 FFRISFACKYAYSLEPQRYLDVVIFQPI*FFIGYVLKGETSLTKKKKE 258
           F R S+A    + ++PQ ++D+++   + F +G  ++ ET+   KKKE
Sbjct: 168 FVRESYAESTDW-IKPQDFVDMILLDSV-FILGVFIQAETTQNIKKKE 213


>At4g19490.2 68417.m02867 expressed protein
          Length = 1054

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +3

Query: 27  CSNSIQSVRVEVVYGLXAGAISVDACLYFSLNVN*GVNEKIACYM 161
           C   + S+  +  + L  GA    AC + SLN N  + EK++ Y+
Sbjct: 142 CLREVPSLYFKEDFALEDGATFRSACPFSSLNENLALQEKLSQYL 186


>At4g19490.1 68417.m02866 expressed protein
          Length = 1054

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +3

Query: 27  CSNSIQSVRVEVVYGLXAGAISVDACLYFSLNVN*GVNEKIACYM 161
           C   + S+  +  + L  GA    AC + SLN N  + EK++ Y+
Sbjct: 142 CLREVPSLYFKEDFALEDGATFRSACPFSSLNENLALQEKLSQYL 186


>At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative
           similar to SP|O94761 ATP-dependent DNA helicase Q4
           (RecQ4) {Homo sapiens}; contains Pfam profiles PF00270:
           DEAD/DEAH box helicase, PF00271: Helicase conserved
           C-terminal domain
          Length = 911

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 20/65 (30%), Positives = 32/65 (49%)
 Frame = +3

Query: 9   RIRHEGCSNSIQSVRVEVVYGLXAGAISVDACLYFSLNVN*GVNEKIACYMSDIRDRGRE 188
           RI+   CSN I+ V   V +G+      V A ++FS+    G  E+   Y+ +I   GR+
Sbjct: 527 RIQESFCSNKIRVVVATVAFGMGLDKGDVGAVIHFSVP---GSMEE---YVQEIGRAGRD 580

Query: 189 SAWTY 203
              +Y
Sbjct: 581 GRLSY 585


>At2g26870.1 68415.m03224 phosphoesterase family protein low
           similarity to SP|Q9RGS8 Non-hemolytic phospholipase C
           precursor (EC 3.1.4.3) (Phosphatidylcholine
           cholinephosphohydrolase) {Burkholderia pseudomallei};
           contains Pfam profile PF04185: Phosphoesterase family
          Length = 514

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
 Frame = -1

Query: 697 FKINYSNIPASIINTSLKKERNVF---TYG-TFKD 605
           F I Y NIPA +   SL+K + VF   +YG +FKD
Sbjct: 208 FGIYYQNIPAVLFYQSLRKLKYVFKFHSYGNSFKD 242


>At3g44670.1 68416.m04804 disease resistance protein
           RPP1-Ws[A,C]-like (TIR-NBS-LRR class), putative domain
           signature TIR-NBS-LRR exists, suggestive of a disease
           resistance protein. Closest Col-0 homolog to both RPP1
           Ws-A and RPP1 Ws-C
          Length = 872

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 279 TSFAFEYITNKELNWLENYNI 341
           T   FE+I +KE NW  N+ I
Sbjct: 768 TELVFEFILDKESNWKRNWKI 788


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,576,087
Number of Sequences: 28952
Number of extensions: 251488
Number of successful extensions: 533
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)